Literature DB >> 27245064

Molecular authentication of Tetrastigma hemsleyanum from its adulterant species using ISSR, CAPS, and ITS2 barcode.

Xin Peng1, Xiurong Wu1, Qingyong Ji2, Ruikang Yang1, Yulan Li3.   

Abstract

Tetrastigma hemsleyanum is a rare and endangered herb, which is commercialized as the resource of anti-cancer drugs. Wild T. hemsleyanum plants are on the verge of extinction recently, there are increasing numbers of counterfeits on the market. In the present study, inter-simple sequence repeat (ISSR), Cleaved amplified polymorphic sequence (CAPS), and the internal transcribed spacer region II (ITS2) barcode were used for the first time for the authentication of T. hemsleyanum from its commonly counterfeits. ISSR analysis suggested that it was a useful method for distinguishing T. hemsleyanum from its adulterants of different genus. However, it was insufficient to distinguish T. hemsleyanum from those adulterants of the same genus. ITS2 of T. hemsleyanum and the commonly counterfeits were amplified and sequenced. The Neighbor-Joining tree constructed from the ITS2 sequences showed that T. hemsleyanum was clearly differentiated from all counterfeits samples. A mutation site in the ITS2 region of T. hemsleyanum had been found which could be recognized by the restriction endonuclease NcoI. T. hemsleyanum could be readily distinguished from counterfeits as the PCR products from T. hemsleyanum could be digested sufficiently by NcoI, while the PCR products from counterfeits could not be digested. The results indicated that CAPS and ITS2 barcode methods provided effective and accurate identification of T. hemsleyanum from all its adulterants, while ISSR could only distinguish T. hemsleyanum from its adulterants of different genus. The CAPS method developed in the present study will serve as a reliable tool for safe and effective use of T. hemsleyanum in the clinic application. It will also play an important role for the identification, management and conservation of this endangered species.

Entities:  

Keywords:  CAPS; ISSR; ITS2 barcode; Tetrastigma hemsleyanum

Mesh:

Substances:

Year:  2016        PMID: 27245064     DOI: 10.1007/s11033-016-4023-x

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  10 in total

1.  Ethylacetate extract from Tetrastigma hemsleyanum induces apoptosis via the mitochondrial caspase-dependent intrinsic pathway in HepG2 cells.

Authors:  Xin Peng; Yuan-Yuan Zhang; Jin Wang; Qingyong Ji
Journal:  Tumour Biol       Date:  2015-08-09

2.  Genomic instability in phenotypically normal regenerants of medicinal plant Codonopsis lanceolata Benth. et Hook. f., as revealed by ISSR and RAPD markers.

Authors:  W L Guo; L Gong; Z F Ding; Y D Li; F X Li; S P Zhao; B Liu
Journal:  Plant Cell Rep       Date:  2006-03-31       Impact factor: 4.570

Review 3.  20 years since the introduction of DNA barcoding: from theory to application.

Authors:  Živa Fišer Pečnikar; Elena V Buzan
Journal:  J Appl Genet       Date:  2013-11-08       Impact factor: 3.240

4.  Genetic variation of Croton stellatopilosus Ohba based on non-coding DNA sequences of ITS, trnK and trnL-F regions.

Authors:  Prasob-orn Rinthong; Shu Zhu; Katsuko Komatsu; Suchart Chanama; Wanchai De-Eknamkul
Journal:  J Nat Med       Date:  2011-04-16       Impact factor: 2.343

5.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

6.  CAPS markers using mitochondrial consensus primers for molecular identification of Panax species and Korean ginseng cultivars (Panax ginseng C. A. Meyer).

Authors:  Jei-Wan Lee; Kyong-Hwan Bang; Young-Chang Kim; A-Yeon Seo; Ick-Hyun Jo; Jeong-Hoon Lee; Ok-Tae Kim; Dong-Yun Hyun; Seon-Woo Cha; Joon-Hyeong Cho
Journal:  Mol Biol Rep       Date:  2011-05-15       Impact factor: 2.316

7.  Discrimination of Lonicera japonica THUNB. from different geographical origins using restriction fragment length polymorphism analysis.

Authors:  Chong-Zhi Wang; Ping Li; Jia-Yi Ding; Anna Fishbein; Chun-Su Yuan
Journal:  Biol Pharm Bull       Date:  2007-04       Impact factor: 2.233

8.  Use of inter-simple sequence repeat markers to develop strain-specific SCAR markers for Flammulina velutipes.

Authors:  Hongyan Su; Lei Wang; Linde Liu; Xiaoyan Chi; Yuxiang Zhang
Journal:  J Appl Genet       Date:  2008       Impact factor: 3.240

9.  Genetic analysis of litchi (Litchi chinensis Sonn.) in southern China by improved random amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR).

Authors:  Yan Long; Jingliang Cheng; Zhiqiang Mei; Ling Zhao; Chunli Wei; Shelly Fu; Md Asaduzzaman Khan; Junjiang Fu
Journal:  Mol Biol Rep       Date:  2014-09-24       Impact factor: 2.316

10.  Molecular authentication of Cissampelos pareira L. var. hirsuta (Buch.-Ham. ex DC.) Forman, the genuine source plant of ayurvedic raw drug 'Patha', and its other source plants by ISSR markers.

Authors:  Deepu Vijayan; Archana Cheethaparambil; Geetha Sivadasan Pillai; Indira Balachandran
Journal:  3 Biotech       Date:  2013-11-26       Impact factor: 2.406

  10 in total
  2 in total

1.  The complete chloroplast genomes of Tetrastigma hemsleyanum (Vitaceae) from different regions of China: molecular structure, comparative analysis and development of DNA barcodes for its geographical origin discrimination.

Authors:  Shujie Dong; Manjia Zhou; Jinxing Zhu; Qirui Wang; Yuqing Ge; Rubin Cheng
Journal:  BMC Genomics       Date:  2022-08-26       Impact factor: 4.547

Review 2.  A comprehensive review on traditional uses, chemical compositions, pharmacology properties and toxicology of Tetrastigma hemsleyanum.

Authors:  Tao Ji; Wei Wei Ji; Juan Wang; Hong Jiang Chen; Xin Peng; Ke Jun Cheng; Dan Qiu; Wei Jie Yang
Journal:  J Ethnopharmacol       Date:  2020-08-12       Impact factor: 4.360

  2 in total

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