Literature DB >> 24153370

Water lubricates hydrogen-bonded molecular machines.

Matthijs R Panman1, Bert H Bakker, David den Uyl, Euan R Kay, David A Leigh, Wybren Jan Buma, Albert M Brouwer, Jan A J Geenevasen, Sander Woutersen.   

Abstract

The mechanical behaviour of molecular machines differs greatly from that of their macroscopic counterparts. This applies particularly when considering concepts such as friction and lubrication, which are key to optimizing the operation of macroscopic machinery. Here, using time-resolved vibrational spectroscopy and NMR-lineshape analysis, we show that for molecular machinery consisting of hydrogen-bonded components the relative motion of the components is accelerated strongly by adding small amounts of water. The translation of a macrocycle along a thread and the rotation of a molecular wheel around an axle both accelerate significantly on the addition of water, whereas other protic liquids have much weaker or opposite effects. We tentatively assign the superior accelerating effect of water to its ability to form a three-dimensional hydrogen-bond network between the moving parts of the molecular machine. These results may indicate a more general phenomenon that helps explain the function of water as the 'lubricant of life'.

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Year:  2013        PMID: 24153370     DOI: 10.1038/nchem.1744

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  23 in total

1.  Photoisomerization of a rotaxane hydrogen bonding template: light-induced acceleration of a large amplitude rotational motion.

Authors:  Francesco G Gatti; Salvador León; Jenny K Y Wong; Giovanni Bottari; Andrea Altieri; M Angeles Farran Morales; Simon J Teat; Céline Frochot; David A Leigh; Albert M Brouwer; Francesco Zerbetto
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-27       Impact factor: 11.205

2.  Ultrafast dynamics and hydrogen-bond structure in aqueous solutions of model peptides.

Authors:  Kamila Mazur; Ismael A Heisler; Stephen R Meech
Journal:  J Phys Chem B       Date:  2010-08-19       Impact factor: 2.991

3.  Operation mechanism of a molecular machine revealed using time-resolved vibrational spectroscopy.

Authors:  Matthijs R Panman; Pavol Bodis; Daniel J Shaw; Bert H Bakker; Arthur C Newton; Euan R Kay; Albert M Brouwer; Wybren Jan Buma; David A Leigh; Sander Woutersen
Journal:  Science       Date:  2010-06-04       Impact factor: 47.728

4.  Reorientation and allied dynamics in water and aqueous solutions.

Authors:  Damien Laage; Guillaume Stirnemann; Fabio Sterpone; Rossend Rey; James T Hynes
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

5.  The dynamics of water-protein interaction studied by ultrafast optical Kerr-effect spectroscopy.

Authors:  Neil T Hunt; Lisa Kattner; Richard P Shanks; Klaas Wynne
Journal:  J Am Chem Soc       Date:  2007-02-23       Impact factor: 15.419

6.  Stiff, and sticky in the right places: the dramatic influence of preorganizing guest binding sites on the hydrogen bond-directed assembly of rotaxanes.

Authors:  F G Gatti; D A Leigh; S A Nepogodiev; A M Slawin; S J Teat; J K Wong
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

7.  Water-inserted alpha-helical segments implicate reverse turns as folding intermediates.

Authors:  M Sundaralingam; Y C Sekharudu
Journal:  Science       Date:  1989-06-16       Impact factor: 47.728

8.  Water: foldase activity in catalyzing polypeptide conformational rearrangements.

Authors:  F Xu; T A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

9.  A switching cascade of hydrazone-based rotary switches through coordination-coupled proton relays.

Authors:  Debdas Ray; Justin T Foy; Russell P Hughes; Ivan Aprahamian
Journal:  Nat Chem       Date:  2012-07-29       Impact factor: 24.427

10.  Site-resolved measurement of water-protein interactions by solution NMR.

Authors:  Nathaniel V Nucci; Maxim S Pometun; A Joshua Wand
Journal:  Nat Struct Mol Biol       Date:  2011-01-02       Impact factor: 15.369

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  24 in total

Review 1.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

2.  K+ congeners that do not compromise Na+ activation of the Na+,K+-ATPase: hydration of the ion binding cavity likely controls ion selectivity.

Authors:  Yasser A Mahmmoud; Wojciech Kopec; Himanshu Khandelia
Journal:  J Biol Chem       Date:  2014-12-22       Impact factor: 5.157

3.  Methodology for the Simulation of Molecular Motors at Different Scales.

Authors:  Abhishek Singharoy; Christophe Chipot
Journal:  J Phys Chem B       Date:  2016-11-30       Impact factor: 2.991

4.  Rapid Macrocycle Threading by a Fluorescent Dye-Polymer Conjugate in Water with Nanomolar Affinity.

Authors:  Evan M Peck; Wenqi Liu; Graeme T Spence; Scott K Shaw; Anthony P Davis; Harry Destecroix; Bradley D Smith
Journal:  J Am Chem Soc       Date:  2015-06-29       Impact factor: 15.419

Review 5.  Rotaxane nanomachines in future molecular electronics.

Authors:  Peiqiao Wu; Bhushan Dharmadhikari; Prabir Patra; Xingguo Xiong
Journal:  Nanoscale Adv       Date:  2022-06-24

6.  High-resolution crystal structures of protein helices reconciled with three-centered hydrogen bonds and multipole electrostatics.

Authors:  Daniel J Kuster; Chengyu Liu; Zheng Fang; Jay W Ponder; Garland R Marshall
Journal:  PLoS One       Date:  2015-04-20       Impact factor: 3.240

7.  Effective Energy Transfer via Plasmon-Activated High-Energy Water Promotes Its Fundamental Activities of Solubility, Ionic Conductivity, and Extraction at Room Temperature.

Authors:  Chih-Ping Yang; Hsiao-Chien Chen; Ching-Chiung Wang; Po-Wei Tsai; Chia-Wen Ho; Yu-Chuan Liu
Journal:  Sci Rep       Date:  2015-12-10       Impact factor: 4.379

8.  Cyclization of interlocked fumaramides into β-lactams: experimental and computational mechanistic assessment of the key intercomponent proton transfer and the stereocontrolling active pocket.

Authors:  Alberto Martinez-Cuezva; Aurelia Pastor; Marta Marin-Luna; Carmen Diaz-Marin; Delia Bautista; Mateo Alajarin; Jose Berna
Journal:  Chem Sci       Date:  2020-11-11       Impact factor: 9.825

9.  Light Effect on Water Viscosity: Implication for ATP Biosynthesis.

Authors:  Andrei P Sommer; Mike Kh Haddad; Hans-Jörg Fecht
Journal:  Sci Rep       Date:  2015-07-08       Impact factor: 4.379

Review 10.  The Clusters-in-a-Liquid Approach for Solvation: New Insights from the Conformer Specific Gas Phase Spectroscopy and Vibrational Optical Activity Spectroscopy.

Authors:  Angelo S Perera; Javix Thomas; Mohammad R Poopari; Yunjie Xu
Journal:  Front Chem       Date:  2016-02-25       Impact factor: 5.221

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