Literature DB >> 20666567

Ultrafast dynamics and hydrogen-bond structure in aqueous solutions of model peptides.

Kamila Mazur1, Ismael A Heisler, Stephen R Meech.   

Abstract

The dynamics of water molecules in the hydration layers of proteins are critical for biological function. Here the molecular dynamics in aqueous solutions of model hydrophilic and amphiphilic dipeptides are studied as a function of concentration using the ultrafast optical Kerr effect (OKE). The OKE is a direct time-domain method which yields both picosecond time scale molecular dynamics and low-frequency (Terahertz) Raman spectra, which contain information on the hydrogen-bonded structure of aqueous solutions. Two distinct concentration regimes are identified, above and below 0.4 M peptide concentration. In the low-concentration regime the tetrahedral water structure is largely preserved but the structural dynamics in water are slowed significantly by interaction with the peptide. The slow down is more marked for the hydrophilic than the amphiphilic peptide. Suppression of water structural dynamics observed is greater than that reported for retardation of the water reorientation in NMR, reflecting the different dynamics probed by these different methods. Above 0.4 M the tetrahedral water structure is more strongly perturbed, a contribution to the THz Raman spectrum from the solvated peptide is observed, and structural dynamics in the solution are markedly slowed. This is assigned to slow relaxation within an H-bonded network of peptide molecules. The strong concentration dependence observed goes some way toward explaining disagreements between different measurements of the dynamics of peptide solvation which have appeared in the literature.

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Year:  2010        PMID: 20666567     DOI: 10.1021/jp106423a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Time-dependent density functional theory study on the electronic excited-state hydrogen bonding of the chromophore coumarin 153 in a room-temperature ionic liquid.

Authors:  Dandan Wang; Ce Hao; Se Wang; Hong Dong; Jieshan Qiu
Journal:  J Mol Model       Date:  2011-06-03       Impact factor: 1.810

2.  Peptide-Protein Binding Investigated by Far-IR Spectroscopy and Molecular Dynamics Simulations.

Authors:  Yoann Cote; Yves Nominé; Juan Ramirez; Petra Hellwig; Roland H Stote
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

3.  Water lubricates hydrogen-bonded molecular machines.

Authors:  Matthijs R Panman; Bert H Bakker; David den Uyl; Euan R Kay; David A Leigh; Wybren Jan Buma; Albert M Brouwer; Jan A J Geenevasen; Sander Woutersen
Journal:  Nat Chem       Date:  2013-09-01       Impact factor: 24.427

4.  Amide Spectral Fingerprints are Hydrogen Bonding-Mediated.

Authors:  Sara Gómez; Cettina Bottari; Franco Egidi; Tommaso Giovannini; Barbara Rossi; Chiara Cappelli
Journal:  J Phys Chem Lett       Date:  2022-06-30       Impact factor: 6.888

5.  Hydration Dynamics of Model Peptides with Different Hydrophobic Character.

Authors:  Laura Lupi; Brenda Bracco; Paola Sassi; Silvia Corezzi; Assunta Morresi; Daniele Fioretto; Lucia Comez; Marco Paolantoni
Journal:  Life (Basel)       Date:  2022-04-12

6.  In Silico Studies of Small Molecule Interactions with Enzymes Reveal Aspects of Catalytic Function.

Authors:  Rajni Verma; Katie Mitchell-Koch
Journal:  Catalysts       Date:  2017-07-14       Impact factor: 4.146

  6 in total

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