Literature DB >> 30503948

Challenges in diffusion MRI tractography - Lessons learned from international benchmark competitions.

Kurt G Schilling1, Alessandro Daducci2, Klaus Maier-Hein3, Cyril Poupon4, Jean-Christophe Houde5, Vishwesh Nath6, Adam W Anderson7, Bennett A Landman8, Maxime Descoteaux5.   

Abstract

Diffusion MRI (dMRI) fiber tractography has become a pillar of the neuroimaging community due to its ability to noninvasively map the structural connectivity of the brain. Despite widespread use in clinical and research domains, these methods suffer from several potential drawbacks or limitations. Thus, validating the accuracy and reproducibility of techniques is critical for sound scientific conclusions and effective clinical outcomes. Towards this end, a number of international benchmark competitions, or "challenges", has been organized by the diffusion MRI community in order to investigate the reliability of the tractography process by providing a platform to compare algorithms and results in a fair manner, and evaluate common and emerging algorithms in an effort to advance the state of the field. In this paper, we summarize the lessons from a decade of challenges in tractography, and give perspective on the past, present, and future "challenges" that the field of diffusion tractography faces.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Accuracy; Algorithms; Challenges; Diffusion MRI; Tractography; Validation

Mesh:

Year:  2018        PMID: 30503948      PMCID: PMC6331218          DOI: 10.1016/j.mri.2018.11.014

Source DB:  PubMed          Journal:  Magn Reson Imaging        ISSN: 0730-725X            Impact factor:   2.546


  77 in total

1.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

2.  Tractometer: towards validation of tractography pipelines.

Authors:  Marc-Alexandre Côté; Gabriel Girard; Arnaud Boré; Eleftherios Garyfallidis; Jean-Christophe Houde; Maxime Descoteaux
Journal:  Med Image Anal       Date:  2013-04-25       Impact factor: 8.545

3.  In vivo estimation of dispersion anisotropy of neurites using diffusion MRI.

Authors:  Maira Tariq; Torben Schneider; Daniel C Alexander; Claudia A M Wheeler-Kingshott; Hui Zhang
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

Review 4.  Validation strategies for the interpretation of microstructure imaging using diffusion MRI.

Authors:  Tim B Dyrby; Giorgio M Innocenti; Martin Bech; Henrik Lundell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

Review 5.  MRI-based myelin water imaging: A technical review.

Authors:  Eva Alonso-Ortiz; Ives R Levesque; G Bruce Pike
Journal:  Magn Reson Med       Date:  2014-03-06       Impact factor: 4.668

6.  Tracking neuronal fiber pathways in the living human brain.

Authors:  T E Conturo; N F Lori; T S Cull; E Akbudak; A Z Snyder; J S Shimony; R C McKinstry; H Burton; M E Raichle
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

7.  The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery.

Authors:  Sonia Pujol; William Wells; Carlo Pierpaoli; Caroline Brun; James Gee; Guang Cheng; Baba Vemuri; Olivier Commowick; Sylvain Prima; Aymeric Stamm; Maged Goubran; Ali Khan; Terry Peters; Peter Neher; Klaus H Maier-Hein; Yundi Shi; Antonio Tristan-Vega; Gopalkrishna Veni; Ross Whitaker; Martin Styner; Carl-Fredrik Westin; Sylvain Gouttard; Isaiah Norton; Laurent Chauvin; Hatsuho Mamata; Guido Gerig; Arya Nabavi; Alexandra Golby; Ron Kikinis
Journal:  J Neuroimaging       Date:  2015-08-11       Impact factor: 2.486

8.  Complex geometric models of diffusion and relaxation in healthy and damaged white matter.

Authors:  Bennett A Landman; Jonathan A D Farrell; Seth A Smith; Daniel S Reich; Peter A Calabresi; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2010-02       Impact factor: 4.044

9.  Mapping mean axon diameter and axonal volume fraction by MRI using temporal diffusion spectroscopy.

Authors:  Junzhong Xu; Hua Li; Kevin D Harkins; Xiaoyu Jiang; Jingping Xie; Hakmook Kang; Mark D Does; John C Gore
Journal:  Neuroimage       Date:  2014-09-16       Impact factor: 6.556

10.  Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison.

Authors:  Uran Ferizi; Benoit Scherrer; Torben Schneider; Mohammad Alipoor; Odin Eufracio; Rutger H J Fick; Rachid Deriche; Markus Nilsson; Ana K Loya-Olivas; Mariano Rivera; Dirk H J Poot; Alonso Ramirez-Manzanares; Jose L Marroquin; Ariel Rokem; Christian Pötter; Robert F Dougherty; Ken Sakaie; Claudia Wheeler-Kingshott; Simon K Warfield; Thomas Witzel; Lawrence L Wald; José G Raya; Daniel C Alexander
Journal:  NMR Biomed       Date:  2017-06-23       Impact factor: 4.044

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  26 in total

1.  Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7T.

Authors:  Kevin R Sitek; Omer Faruk Gulban; Satrajit S Ghosh; Federico De Martino; Evan Calabrese; G Allan Johnson; Agustin Lage-Castellanos; Michelle Moerel
Journal:  Elife       Date:  2019-08-01       Impact factor: 8.140

2.  Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge.

Authors:  Vishwesh Nath; Kurt G Schilling; Prasanna Parvathaneni; Yuankai Huo; Justin A Blaber; Allison E Hainline; Muhamed Barakovic; David Romascano; Jonathan Rafael-Patino; Matteo Frigo; Gabriel Girard; Jean-Philippe Thiran; Alessandro Daducci; Matt Rowe; Paulo Rodrigues; Vesna Prčkovska; Dogu B Aydogan; Wei Sun; Yonggang Shi; William A Parker; Abdol A Ould Ismail; Ragini Verma; Ryan P Cabeen; Arthur W Toga; Allen T Newton; Jakob Wasserthal; Peter Neher; Klaus Maier-Hein; Giovanni Savini; Fulvia Palesi; Enrico Kaden; Ye Wu; Jianzhong He; Yuanjing Feng; Michael Paquette; Francois Rheault; Jasmeen Sidhu; Catherine Lebel; Alexander Leemans; Maxime Descoteaux; Tim B Dyrby; Hakmook Kang; Bennett A Landman
Journal:  J Magn Reson Imaging       Date:  2019-06-09       Impact factor: 4.813

3.  Cellular Automata Tractography: Fast Geodesic Diffusion MR Tractography and Connectivity Based Segmentation on the GPU.

Authors:  Andac Hamamci
Journal:  Neuroinformatics       Date:  2020-01

4.  Connectomic consistency: a systematic stability analysis of structural and functional connectivity.

Authors:  Yusuf Osmanlıoğlu; Jacob A Alappatt; Drew Parker; Ragini Verma
Journal:  J Neural Eng       Date:  2020-07-13       Impact factor: 5.379

5.  Anatomically informed multi-level fiber tractography for targeted virtual dissection.

Authors:  Andrey Zhylka; Alexander Leemans; Josien P W Pluim; Alberto De Luca
Journal:  MAGMA       Date:  2022-07-29       Impact factor: 2.533

6.  Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?

Authors:  Kurt G Schilling; François Rheault; Laurent Petit; Colin B Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi-Gomez; Marco Pizzolato; Mario Ocampo-Pineda; Simona Schiavi; Erick J Canales-Rodríguez; Alessandro Daducci; Cristina Granziera; Giorgio Innocenti; Jean-Philippe Thiran; Laura Mancini; Stephen Wastling; Sirio Cocozza; Maria Petracca; Giuseppe Pontillo; Matteo Mancini; Sjoerd B Vos; Vejay N Vakharia; John S Duncan; Helena Melero; Lidia Manzanedo; Emilio Sanz-Morales; Ángel Peña-Melián; Fernando Calamante; Arnaud Attyé; Ryan P Cabeen; Laura Korobova; Arthur W Toga; Anupa Ambili Vijayakumari; Drew Parker; Ragini Verma; Ahmed Radwan; Stefan Sunaert; Louise Emsell; Alberto De Luca; Alexander Leemans; Claude J Bajada; Hamied Haroon; Hojjatollah Azadbakht; Maxime Chamberland; Sila Genc; Chantal M W Tax; Ping-Hong Yeh; Rujirutana Srikanchana; Colin D Mcknight; Joseph Yuan-Mou Yang; Jian Chen; Claire E Kelly; Chun-Hung Yeh; Jerome Cochereau; Jerome J Maller; Thomas Welton; Fabien Almairac; Kiran K Seunarine; Chris A Clark; Fan Zhang; Nikos Makris; Alexandra Golby; Yogesh Rathi; Lauren J O'Donnell; Yihao Xia; Dogu Baran Aydogan; Yonggang Shi; Francisco Guerreiro Fernandes; Mathijs Raemaekers; Shaun Warrington; Stijn Michielse; Alonso Ramírez-Manzanares; Luis Concha; Ramón Aranda; Mariano Rivera Meraz; Garikoitz Lerma-Usabiaga; Lucas Roitman; Lucius S Fekonja; Navona Calarco; Michael Joseph; Hajer Nakua; Aristotle N Voineskos; Philippe Karan; Gabrielle Grenier; Jon Haitz Legarreta; Nagesh Adluru; Veena A Nair; Vivek Prabhakaran; Andrew L Alexander; Koji Kamagata; Yuya Saito; Wataru Uchida; Christina Andica; Masahiro Abe; Roza G Bayrak; Claudia A M Gandini Wheeler-Kingshott; Egidio D'Angelo; Fulvia Palesi; Giovanni Savini; Nicolò Rolandi; Pamela Guevara; Josselin Houenou; Narciso López-López; Jean-François Mangin; Cyril Poupon; Claudio Román; Andrea Vázquez; Chiara Maffei; Mavilde Arantes; José Paulo Andrade; Susana Maria Silva; Vince D Calhoun; Eduardo Caverzasi; Simone Sacco; Michael Lauricella; Franco Pestilli; Daniel Bullock; Yang Zhan; Edith Brignoni-Perez; Catherine Lebel; Jess E Reynolds; Igor Nestrasil; René Labounek; Christophe Lenglet; Amy Paulson; Stefania Aulicka; Sarah R Heilbronner; Katja Heuer; Bramsh Qamar Chandio; Javier Guaje; Wei Tang; Eleftherios Garyfallidis; Rajikha Raja; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Neuroimage       Date:  2021-08-22       Impact factor: 7.400

Review 7.  Estimating Brain Connectivity With Diffusion-Weighted Magnetic Resonance Imaging: Promise and Peril.

Authors:  Mark D Grier; Jan Zimmermann; Sarah R Heilbronner
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2020-04-27

8.  Tracing in vivo the dorsal loop of the optic radiation: convergent perspectives from tractography and electrophysiology compared to a neuroanatomical ground truth.

Authors:  Rizzi Michele; Sartori Ivana; Del Vecchio Maria; Berta Luca; Lizio Domenico; Zauli Flavia Maria; De Benedictis Alessandro; Sarubbo Silvio; Al-Orabi Khalid; Mariani Valeria; Avanzini Pietro
Journal:  Brain Struct Funct       Date:  2022-03-23       Impact factor: 3.270

9.  White matter hyperintensities induce distal deficits in the connected fibers.

Authors:  Yanpeng Liu; Yiwei Xia; Xiaoxiao Wang; Yanming Wang; Du Zhang; Benedictor Alexander Nguchu; Jiajie He; Yi Wang; Lumeng Yang; Yiqing Wang; Yunqing Ying; Xiaoniu Liang; Qianhua Zhao; Jianjun Wu; Zonghui Liang; Ding Ding; Qiang Dong; Bensheng Qiu; Xin Cheng; Jia-Hong Gao
Journal:  Hum Brain Mapp       Date:  2021-01-08       Impact factor: 5.038

10.  White Matter Microstructural Differences in Youth With Classical Congenital Adrenal Hyperplasia.

Authors:  Devyn L Cotter; Anisa Azad; Ryan P Cabeen; Mimi S Kim; Mitchell E Geffner; Farshid Sepehrband; Megan M Herting
Journal:  J Clin Endocrinol Metab       Date:  2021-10-21       Impact factor: 6.134

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