Literature DB >> 2413007

Natural relationship between bacteroides and flavobacteria.

W G Weisburg, Y Oyaizu, H Oyaizu, C R Woese.   

Abstract

Comparisons among 16S rRNA sequences from various eubacteria reveal a natural relationship between the bacteroides (represented by the Bacteroides fragilis sequence) and a phylogenetic unit that comprises the flavobacteria, cytophagae, flexibacteria, and others (represented by the Flavobacterium heparinum sequence). Although the relationship is not a close one, it is, nevertheless, specific. rRNAs from these two organisms are not only closer to one another in overall sequence than they are to outgroup species (such as Bacillus subtilis, Escherichia coli, Desulfovibrio desulfuricans, and Agrobacterium tumefaciens), but they show common idiosyncrasies (i.e., derived characteristics) in both rRNA sequences and higher-order structures.

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Year:  1985        PMID: 2413007      PMCID: PMC214234          DOI: 10.1128/jb.164.1.230-236.1985

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  19 in total

1.  Mechanism of aminoglycoside antibiotic resistance in anaerobic bacteria: Clostridium perfringens and Bacteroides fragilis.

Authors:  L E Bryan; S K Kowand; H M Van Den Elzen
Journal:  Antimicrob Agents Chemother       Date:  1979-01       Impact factor: 5.191

2.  Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

Authors:  C R Woese; G E Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

3.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

4.  EK2 derivatives of bacteriophage lambda useful in the cloning of DNA from higher organisms: the lambdagtWES system.

Authors:  P Leder; D Tiemeier; L Enquist
Journal:  Science       Date:  1977-04-08       Impact factor: 47.728

5.  A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli: some modifications in the Sanger method for RNA sequencing.

Authors:  C Woese; M Sogin; D Stahl; B J Lewis; L Bonen
Journal:  J Mol Evol       Date:  1976-04-09       Impact factor: 2.395

6.  A bacteriophage lambda vector for cloning large DNA fragments made with several restriction enzymes.

Authors:  W A Loenen; W J Brammar
Journal:  Gene       Date:  1980-08       Impact factor: 3.688

7.  The phylogeny of prokaryotes.

Authors:  G E Fox; E Stackebrandt; R B Hespell; J Gibson; J Maniloff; T A Dyer; R S Wolfe; W E Balch; R S Tanner; L J Magrum; L B Zablen; R Blakemore; R Gupta; L Bonen; B J Lewis; D A Stahl; K R Luehrsen; K N Chen; C R Woese
Journal:  Science       Date:  1980-07-25       Impact factor: 47.728

8.  Structure-independent nucleotide sequence analysis.

Authors:  D R Mills; F R Kramer
Journal:  Proc Natl Acad Sci U S A       Date:  1979-05       Impact factor: 11.205

9.  Phylogenetic analysis of the mycoplasmas.

Authors:  C R Woese; J Maniloff; L B Zablen
Journal:  Proc Natl Acad Sci U S A       Date:  1980-01       Impact factor: 11.205

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  57 in total

1.  How stable is stable? Function versus community composition.

Authors:  A Fernández; S Huang; S Seston; J Xing; R Hickey; C Criddle; J Tiedje
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

Authors:  R I Amann; B J Binder; R J Olson; S W Chisholm; R Devereux; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

Review 3.  Compilation of small ribosomal subunit RNA sequences.

Authors:  J M Neefs; Y Van de Peer; P De Rijk; A Goris; R De Wachter
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

4.  Cloning and sequencing of the class B beta-lactamase gene (ccrA) from Bacteroides fragilis TAL3636.

Authors:  B A Rasmussen; Y Gluzman; F P Tally
Journal:  Antimicrob Agents Chemother       Date:  1990-08       Impact factor: 5.191

5.  Nucleotide sequence analysis of Tn4551: use of ermFS operon fusions to detect promoter activity in Bacteroides fragilis.

Authors:  C J Smith
Journal:  J Bacteriol       Date:  1987-10       Impact factor: 3.490

6.  Genes involved in production of plasmidlike forms by a Bacteroides conjugal chromosomal element share amino acid homology with two-component regulatory systems.

Authors:  A M Stevens; J M Sanders; N B Shoemaker; A A Salyers
Journal:  J Bacteriol       Date:  1992-05       Impact factor: 3.490

7.  Pseudomonas sp. strain 273, an aerobic alpha, omega-dichloroalkaneDegrading bacterium.

Authors:  C Wischnak; F E Löffler; J Li; J W Urbance; R Müller
Journal:  Appl Environ Microbiol       Date:  1998-09       Impact factor: 4.792

8.  Genotypic identification of two groups within the species Bacteroides fragilis by ribotyping and by analysis of PCR-generated fragment patterns and insertion sequence content.

Authors:  I Podglajen; J Breuil; I Casin; E Collatz
Journal:  J Bacteriol       Date:  1995-09       Impact factor: 3.490

9.  Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov.

Authors:  Youlboong Sung; Kirsti M Ritalahti; Robert A Sanford; John W Urbance; Shannon J Flynn; James M Tiedje; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

10.  Isolation, expression, and nucleotide sequence of the sod gene from Porphyromonas gingivalis.

Authors:  J I Choi; N Takahashi; T Kato; H K Kuramitsu
Journal:  Infect Immun       Date:  1991-04       Impact factor: 3.441

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