Literature DB >> 24115637

A biorepository for ophthalmic surgical specimens.

Jessica M Skeie1, Stephen H Tsang, Ryan Vande Zande, Macy M Fickbohm, Shaival S Shah, John G Vallone, Vinit B Mahajan.   

Abstract

Biorepositories are collections of surgically obtained human tissues for current and future investigations of disease mechanisms, therapeutics, and diagnostics. In ophthalmology, a critical challenge is how to interface the operating room with the laboratory. To attain standards required for basic research, clinical and research teams must cooperate to collect, annotate, and store specimens that yield consistent results required for advanced molecular techniques. We developed an efficient platform for obtaining vitreous and other eye tissues from the operating room and transferring them to the lab. The platform includes a mobile lab cart for on-site tissue processing, a multi-user, web-based database for point-of-care phenotypic capture, and an integrated data tracking system for long-term storage. These biorepository instruments have proven essential for our studies in ophthalmic disease proteomics. This system can be implemented in other operating rooms and laboratories for a variety of biological tissues.
© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Biobank; Biorepository; Retina; Vitreous

Mesh:

Year:  2013        PMID: 24115637      PMCID: PMC3964151          DOI: 10.1002/prca.201300043

Source DB:  PubMed          Journal:  Proteomics Clin Appl        ISSN: 1862-8346            Impact factor:   3.494


  21 in total

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Authors:  Robert Mitchell
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Review 2.  Banking of biological fluids for studies of disease-associated protein biomarkers.

Authors:  Anne-Sofie Schrohl; Sidse Würtz; Elise Kohn; Rosamonde E Banks; Hans Jørgen Nielsen; Fred C G J Sweep; Nils Brünner
Journal:  Mol Cell Proteomics       Date:  2008-08-01       Impact factor: 5.911

3.  Biorepository standards and protocols for collecting, processing, and storing human tissues.

Authors:  Dean Troyer
Journal:  Methods Mol Biol       Date:  2008

4.  Design and implementation of a high-throughput biological sample processing facility using modern manufacturing principles.

Authors:  Paul Downey; Tim C Peakman
Journal:  Int J Epidemiol       Date:  2008-04       Impact factor: 7.196

5.  Design and implementation of a large-scale liquid nitrogen archive.

Authors:  Mark Fagan; Peter Ball
Journal:  Int J Epidemiol       Date:  2008-04       Impact factor: 7.196

6.  The UK Biobank sample handling and storage validation studies.

Authors:  Tim C Peakman; Paul Elliott
Journal:  Int J Epidemiol       Date:  2008-04       Impact factor: 7.196

7.  Meeting the governance challenges of next-generation biorepository research.

Authors:  Stephanie M Fullerton; Nicholas R Anderson; Greg Guzauskas; Dena Freeman; Kelly Fryer-Edwards
Journal:  Sci Transl Med       Date:  2010-01-20       Impact factor: 17.956

8.  Big data: The future of biocuration.

Authors:  Doug Howe; Maria Costanzo; Petra Fey; Takashi Gojobori; Linda Hannick; Winston Hide; David P Hill; Renate Kania; Mary Schaeffer; Susan St Pierre; Simon Twigger; Owen White; Seung Yon Rhee
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

Review 9.  Biobanking for better healthcare.

Authors:  Peter H J Riegman; Manuel M Morente; Fay Betsou; Pasquale de Blasio; Peter Geary
Journal:  Mol Oncol       Date:  2008-07-30       Impact factor: 6.603

Review 10.  Biobanking past, present and future: responsibilities and benefits.

Authors:  Yvonne G De Souza; John S Greenspan
Journal:  AIDS       Date:  2013-01-28       Impact factor: 4.177

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  10 in total

1.  Proteomics and the eye.

Authors:  Richard D Semba; Jan J Enghild
Journal:  Proteomics Clin Appl       Date:  2014-04       Impact factor: 3.494

2.  Dissection of Human Retina and RPE-Choroid for Proteomic Analysis.

Authors:  Thiago Cabral; Marcus A Toral; Gabriel Velez; James E DiCarlo; Anuradha M Gore; MaryAnn Mahajan; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  J Vis Exp       Date:  2017-11-12       Impact factor: 1.355

3.  Personalized Proteomics in Proliferative Vitreoretinopathy Implicate Hematopoietic Cell Recruitment and mTOR as a Therapeutic Target.

Authors:  C Nathaniel Roybal; Gabriel Velez; Marcus A Toral; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  Am J Ophthalmol       Date:  2017-12-13       Impact factor: 5.258

4.  Proteomic insight into the molecular function of the vitreous.

Authors:  Jessica M Skeie; C Nathaniel Roybal; Vinit B Mahajan
Journal:  PLoS One       Date:  2015-05-28       Impact factor: 3.240

5.  Proteome and Metabolome of Subretinal Fluid in Central Serous Chorioretinopathy and Rhegmatogenous Retinal Detachment: A Pilot Case Study.

Authors:  Laura Kowalczuk; Alexandre Matet; Marianne Dor; Nasim Bararpour; Alejandra Daruich; Ali Dirani; Francine Behar-Cohen; Aurélien Thomas; Natacha Turck
Journal:  Transl Vis Sci Technol       Date:  2018-01-18       Impact factor: 3.283

6.  Personalized Proteomics for Precision Health: Identifying Biomarkers of Vitreoretinal Disease.

Authors:  Gabriel Velez; Peter H Tang; Thiago Cabral; Galaxy Y Cho; Daniel A Machlab; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  Transl Vis Sci Technol       Date:  2018-09-26       Impact factor: 3.283

Review 7.  Molecular Surgery: Proteomics of a Rare Genetic Disease Gives Insight into Common Causes of Blindness.

Authors:  Gabriel Velez; Vinit B Mahajan
Journal:  iScience       Date:  2020-10-13

8.  The Xiangya Ocular Tumor Bank: A Disease-Specific Biobank for Advancing Translational Research Into Ocular Tumors.

Authors:  Zhaolin Gao; Jia Tan; Sha Wang; Haiyang Yu; Ziyu Zhou; Yun Zhang; Mushi Zhou; Xiaobo Xia; Fei Yao; Jufang Huang
Journal:  Front Med (Lausanne)       Date:  2022-01-27

9.  Investigation of Cas9 antibodies in the human eye.

Authors:  Marcus A Toral; Carsten T Charlesworth; Benjamin Ng; Teja Chemudupati; Shota Homma; Hiromitsu Nakauchi; Alexander G Bassuk; Matthew H Porteus; Vinit B Mahajan
Journal:  Nat Commun       Date:  2022-02-25       Impact factor: 17.694

10.  ProSave: an application for restoring quantitative data to manipulated subsets of protein lists.

Authors:  Daniel A Machlab; Gabriel Velez; Alexander G Bassuk; Vinit B Mahajan
Journal:  Source Code Biol Med       Date:  2018-11-12
  10 in total

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