Literature DB >> 29155757

Dissection of Human Retina and RPE-Choroid for Proteomic Analysis.

Thiago Cabral1, Marcus A Toral2, Gabriel Velez2, James E DiCarlo3, Anuradha M Gore4, MaryAnn Mahajan4, Stephen H Tsang3, Alexander G Bassuk5, Vinit B Mahajan6.   

Abstract

The human retina is composed of the sensory neuroretina and the underlying retinal pigmented epithelium (RPE), which is firmly complexed to the vascular choroid layer. Different regions of the retina are anatomically and molecularly distinct, facilitating unique functions and demonstrating differential susceptibility to disease. Proteomic analysis of each of these regions and layers can provide vital insights into the molecular process of many diseases, including Age-Related Macular Degeneration (AMD), diabetes mellitus, and glaucoma. However, separation of retinal regions and layers is essential before quantitative proteomic analysis can be accomplished. Here, we describe a method for dissection and collection of the foveal, macular, and peripheral retinal regions and underlying RPE-choroid complex, involving regional punch biopsies and manual removal of tissue layers from a human eye.One-dimensional SDS-PAGE as well as downstream proteomic analysis, such as liquid chromatography-tandem mass spectrometry (LC-MS/MS), can be used to identify proteins in each dissected retinal layer, revealing molecular biomarkers for retinal disease.

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Year:  2017        PMID: 29155757      PMCID: PMC5755368          DOI: 10.3791/56203

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  21 in total

1.  Assessing quantitative post-mortem changes in the gray matter of the human frontal cortex proteome by 2-D DIGE.

Authors:  Anna Crecelius; Andrea Götz; Thomas Arzberger; Thomas Fröhlich; Georg J Arnold; Isidro Ferrer; Hans A Kretzschmar
Journal:  Proteomics       Date:  2008-03       Impact factor: 3.984

2.  A biorepository for ophthalmic surgical specimens.

Authors:  Jessica M Skeie; Stephen H Tsang; Ryan Vande Zande; Macy M Fickbohm; Shaival S Shah; John G Vallone; Vinit B Mahajan
Journal:  Proteomics Clin Appl       Date:  2013-11-22       Impact factor: 3.494

3.  Proteomic analysis of frozen tissue samples using laser capture microdissection.

Authors:  Sumana Mukherjee; Jaime Rodriguez-Canales; Jeffrey Hanson; Michael R Emmert-Buck; Michael A Tangrea; Darue A Prieto; Josip Blonder; Donald J Johann
Journal:  Methods Mol Biol       Date:  2013

4.  Proteomic analysis of vitreous biopsy techniques.

Authors:  Jessica M Skeie; Eric N Brown; Harryl D Martinez; Stephen R Russell; Emily S Birkholz; James C Folk; H Culver Boldt; Karen M Gehrs; Edwin M Stone; Michael E Wright; Vinit B Mahajan
Journal:  Retina       Date:  2012 Nov-Dec       Impact factor: 4.256

5.  Proteomic landscape of the human choroid-retinal pigment epithelial complex.

Authors:  Jessica M Skeie; Vinit B Mahajan
Journal:  JAMA Ophthalmol       Date:  2014-11       Impact factor: 7.389

6.  Human retinal pigment epithelium proteome changes in early diabetes.

Authors:  A Decanini; P R Karunadharma; C L Nordgaard; X Feng; T W Olsen; D A Ferrington
Journal:  Diabetologia       Date:  2008-04-15       Impact factor: 10.122

7.  Precision Medicine: Personalized Proteomics for the Diagnosis and Treatment of Idiopathic Inflammatory Disease.

Authors:  Gabriel Velez; C Nathaniel Roybal; Diana Colgan; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  JAMA Ophthalmol       Date:  2016-04       Impact factor: 7.389

8.  Proteomic insight into the molecular function of the vitreous.

Authors:  Jessica M Skeie; C Nathaniel Roybal; Vinit B Mahajan
Journal:  PLoS One       Date:  2015-05-28       Impact factor: 3.240

9.  Proteomic interactions in the mouse vitreous-retina complex.

Authors:  Jessica M Skeie; Vinit B Mahajan
Journal:  PLoS One       Date:  2013-11-29       Impact factor: 3.240

10.  Glaucoma related Proteomic Alterations in Human Retina Samples.

Authors:  Sebastian Funke; Natarajan Perumal; Sabine Beck; Silke Gabel-Scheurich; Carsten Schmelter; Julia Teister; Claudia Gerbig; Oliver W Gramlich; Norbert Pfeiffer; Franz H Grus
Journal:  Sci Rep       Date:  2016-07-18       Impact factor: 4.379

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  3 in total

1.  Extracellular superoxide dismutase (SOD3) regulates oxidative stress at the vitreoretinal interface.

Authors:  Katherine J Wert; Gabriel Velez; Madeline R Cross; Brett A Wagner; Melissa L Teoh-Fitzgerald; Garry R Buettner; J Jason McAnany; Alicia Olivier; Stephen H Tsang; Matthew M Harper; Frederick E Domann; Alexander G Bassuk; Vinit B Mahajan
Journal:  Free Radic Biol Med       Date:  2018-06-22       Impact factor: 7.376

2.  ProSave: an application for restoring quantitative data to manipulated subsets of protein lists.

Authors:  Daniel A Machlab; Gabriel Velez; Alexander G Bassuk; Vinit B Mahajan
Journal:  Source Code Biol Med       Date:  2018-11-12

Review 3.  Retinogenesis of the Human Fetal Retina: An Apical Polarity Perspective.

Authors:  Peter M J Quinn; Jan Wijnholds
Journal:  Genes (Basel)       Date:  2019-11-29       Impact factor: 4.096

  3 in total

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