Literature DB >> 24113208

No need for a power stroke in ISWI-mediated nucleosome sliding.

Johanna Ludwigsen1, Henrike Klinker, Felix Mueller-Planitz.   

Abstract

Nucleosome remodelling enzymes of the ISWI family reposition nucleosomes in eukaryotes. ISWI contains an ATPase and a HAND-SANT-SLIDE (HSS) domain. Conformational changes between these domains have been proposed to be critical for nucleosome repositioning by pulling flanking DNA into the nucleosome. We inserted flexible linkers at strategic sites in ISWI to disrupt this putative power stroke and assess its functional importance by quantitative biochemical assays. Notably, the flexible linkers did not disrupt catalysis. Instead of engaging in a power stroke, the HSS module might therefore assist DNA to ratchet into the nucleosome. Our results clarify the roles had by the domains and suggest that the HSS domain evolved to optimize a rudimentary remodelling engine.

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Year:  2013        PMID: 24113208      PMCID: PMC3981079          DOI: 10.1038/embor.2013.160

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  31 in total

1.  Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme.

Authors:  Iestyn Whitehouse; Chris Stockdale; Andrew Flaus; Mark D Szczelkun; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

2.  Chromatin remodeling by RSC involves ATP-dependent DNA translocation.

Authors:  Anjanabha Saha; Jacqueline Wittmeyer; Bradley R Cairns
Journal:  Genes Dev       Date:  2002-08-15       Impact factor: 11.361

3.  Modulation of kinesin half-site ADP release and kinetic processivity by a spacer between the head groups.

Authors:  David D Hackney; Maryanne F Stock; Jodi Moore; Reid A Patterson
Journal:  Biochemistry       Date:  2003-10-21       Impact factor: 3.162

4.  Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI.

Authors:  Tim Grüne; Jan Brzeski; Anton Eberharter; Cedric R Clapier; Davide F V Corona; Peter B Becker; Christoph W Müller
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

5.  Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex.

Authors:  Ralf Schwanbeck; Hua Xiao; Carl Wu
Journal:  J Biol Chem       Date:  2004-07-15       Impact factor: 5.157

6.  Reconstitution of nucleosome core particles from recombinant histones and DNA.

Authors:  Pamela N Dyer; Raji S Edayathumangalam; Cindy L White; Yunhe Bao; Srinivas Chakravarthy; Uma M Muthurajan; Karolin Luger
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

7.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

8.  Chromatin remodeling through directional DNA translocation from an internal nucleosomal site.

Authors:  Anjanabha Saha; Jacqueline Wittmeyer; Bradley R Cairns
Journal:  Nat Struct Mol Biol       Date:  2005-08-07       Impact factor: 15.369

9.  Nucleosome sliding by Chd1 does not require rigid coupling between DNA-binding and ATPase domains.

Authors:  Ilana M Nodelman; Gregory D Bowman
Journal:  EMBO Rep       Date:  2013-10-15       Impact factor: 8.807

10.  Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains.

Authors:  Swetansu K Hota; Saurabh K Bhardwaj; Sebastian Deindl; Yuan-chi Lin; Xiaowei Zhuang; Blaine Bartholomew
Journal:  Nat Struct Mol Biol       Date:  2013-01-20       Impact factor: 15.369

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  12 in total

1.  Nucleosome sliding by Chd1 does not require rigid coupling between DNA-binding and ATPase domains.

Authors:  Ilana M Nodelman; Gregory D Bowman
Journal:  EMBO Rep       Date:  2013-10-15       Impact factor: 8.807

2.  Remodelling without a power stroke.

Authors:  Arnob Dutta; Jerry L Workman
Journal:  EMBO Rep       Date:  2013-10-25       Impact factor: 8.807

3.  A nucleotide-driven switch regulates flanking DNA length sensing by a dimeric chromatin remodeler.

Authors:  John D Leonard; Geeta J Narlikar
Journal:  Mol Cell       Date:  2015-02-12       Impact factor: 17.970

4.  Nucleosome spacing generated by ISWI and CHD1 remodelers is constant regardless of nucleosome density.

Authors:  Corinna Lieleg; Philip Ketterer; Johannes Nuebler; Johanna Ludwigsen; Ulrich Gerland; Hendrik Dietz; Felix Mueller-Planitz; Philipp Korber
Journal:  Mol Cell Biol       Date:  2015-03-02       Impact factor: 4.272

5.  Structure and regulation of the chromatin remodeller ISWI.

Authors:  Lijuan Yan; Li Wang; Yuanyuan Tian; Xian Xia; Zhucheng Chen
Journal:  Nature       Date:  2016-12-05       Impact factor: 49.962

6.  Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog.

Authors:  Wei Wang; Jun Xu; Oliver Limbo; Jia Fei; George A Kassavetis; Jenny Chong; James T Kadonaga; Paul Russell; Bing Li; Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-13       Impact factor: 11.205

Review 7.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

Review 8.  Epigenomic regulation of oncogenesis by chromatin remodeling.

Authors:  R Kumar; D-Q Li; S Müller; S Knapp
Journal:  Oncogene       Date:  2016-01-25       Impact factor: 9.867

9.  Molecular Mechanism of Mot1, a TATA-binding Protein (TBP)-DNA Dissociating Enzyme.

Authors:  Ramya Viswanathan; Jason D True; David T Auble
Journal:  J Biol Chem       Date:  2016-06-02       Impact factor: 5.157

Review 10.  Mechanisms of ATP-Dependent Chromatin Remodeling Motors.

Authors:  Coral Y Zhou; Stephanie L Johnson; Nathan I Gamarra; Geeta J Narlikar
Journal:  Annu Rev Biophys       Date:  2016-07-05       Impact factor: 19.763

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