Literature DB >> 27391925

Mechanisms of ATP-Dependent Chromatin Remodeling Motors.

Coral Y Zhou1, Stephanie L Johnson1, Nathan I Gamarra1, Geeta J Narlikar1.   

Abstract

Chromatin remodeling motors play essential roles in all DNA-based processes. These motors catalyze diverse outcomes ranging from sliding the smallest units of chromatin, known as nucleosomes, to completely disassembling chromatin. The broad range of actions carried out by these motors on the complex template presented by chromatin raises many stimulating mechanistic questions. Other well-studied nucleic acid motors provide examples of the depth of mechanistic understanding that is achievable from detailed biophysical studies. We use these studies as a guiding framework to discuss the current state of knowledge of chromatin remodeling mechanisms and highlight exciting open questions that would continue to benefit from biophysical analyses.

Entities:  

Keywords:  ATPase; INO80; ISWI; SWI/SNF; SWR; histones; molecular motors; nucleosome

Mesh:

Substances:

Year:  2016        PMID: 27391925      PMCID: PMC9157391          DOI: 10.1146/annurev-biophys-051013-022819

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   19.763


  122 in total

1.  Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme.

Authors:  Iestyn Whitehouse; Chris Stockdale; Andrew Flaus; Mark D Szczelkun; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

Review 2.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

3.  Dynamic properties of nucleosomes during thermal and ATP-driven mobilization.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

4.  Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling.

Authors:  Mohamedi N Kagalwala; Benjamin J Glaus; Weiwei Dang; Martin Zofall; Blaine Bartholomew
Journal:  EMBO J       Date:  2004-05-06       Impact factor: 11.598

5.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

6.  The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression.

Authors:  Jiansheng Zhou; Jun Y Fan; Danny Rangasamy; David J Tremethick
Journal:  Nat Struct Mol Biol       Date:  2007-10-28       Impact factor: 15.369

7.  Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.

Authors:  Martin Zofall; Jim Persinger; Stefan R Kassabov; Blaine Bartholomew
Journal:  Nat Struct Mol Biol       Date:  2006-03-05       Impact factor: 15.369

8.  Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes.

Authors:  Chris Stockdale; Andrew Flaus; Helder Ferreira; Tom Owen-Hughes
Journal:  J Biol Chem       Date:  2006-04-10       Impact factor: 5.157

9.  N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex.

Authors:  Wei-Hua Wu; Chwen-Huey Wu; Andreas Ladurner; Gaku Mizuguchi; Debbie Wei; Hua Xiao; Ed Luk; Anand Ranjan; Carl Wu
Journal:  J Biol Chem       Date:  2008-12-16       Impact factor: 5.157

10.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

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  54 in total

1.  Distortion of histone octamer core promotes nucleosome mobilization by a chromatin remodeler.

Authors:  Kalyan K Sinha; John D Gross; Geeta J Narlikar
Journal:  Science       Date:  2017-01-20       Impact factor: 47.728

Review 2.  The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles.

Authors:  Dongjie Li; Jie Liu; Wu Liu; Guang Li; Zhongnan Yang; Peng Qin; Lin Xu
Journal:  Chromosoma       Date:  2017-02-17       Impact factor: 4.316

3.  The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

Authors:  Nathan Gamarra; Stephanie L Johnson; Michael J Trnka; Alma L Burlingame; Geeta J Narlikar
Journal:  Elife       Date:  2018-04-17       Impact factor: 8.140

Review 4.  Understanding nucleosome dynamics and their links to gene expression and DNA replication.

Authors:  William K M Lai; B Franklin Pugh
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-24       Impact factor: 94.444

5.  Inhibition of enhancer of zeste homolog 2 increases the expression of p16 and suppresses the proliferation and migration of ovarian carcinoma cells in vitro and in vivo.

Authors:  Fangfang Lu; Hong Xu; Qi Wang; Meiyi Li; Jiahua Meng; Yan Kuang
Journal:  Oncol Lett       Date:  2017-12-28       Impact factor: 2.967

6.  Nucleosomal proofreading of activator-promoter interactions.

Authors:  Robert Shelansky; Hinrich Boeger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-21       Impact factor: 11.205

7.  A SWI/SNF subunit regulates chromosomal dissociation of structural maintenance complex 5 during DNA repair in plant cells.

Authors:  Jieming Jiang; Ning Mao; Huan Hu; Jiahang Tang; Danlu Han; Song Liu; Qian Wu; Yiyang Liu; Changlian Peng; Jianbin Lai; Chengwei Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-08       Impact factor: 11.205

Review 8.  Ten principles of heterochromatin formation and function.

Authors:  Robin C Allshire; Hiten D Madhani
Journal:  Nat Rev Mol Cell Biol       Date:  2017-12-13       Impact factor: 94.444

Review 9.  Sequence-specific targeting of chromatin remodelers organizes precisely positioned nucleosomes throughout the genome.

Authors:  Gregory D Bowman; Jeffrey N McKnight
Journal:  Bioessays       Date:  2016-11-16       Impact factor: 4.345

10.  Smarca5-mediated epigenetic programming facilitates fetal HSPC development in vertebrates.

Authors:  Yanyan Ding; Wen Wang; Dongyuan Ma; Guixian Liang; Zhixin Kang; Yuanyuan Xue; Yifan Zhang; Lu Wang; Jian Heng; Yong Zhang; Feng Liu
Journal:  Blood       Date:  2021-01-14       Impact factor: 22.113

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