Literature DB >> 24109301

1-(2,4-Di-nitro-phen-yl)-2-[(E)-2,4,5-tri-meth-oxy-benzyl-idene]hydrazine.

Hoong-Kun Fun1, Suchada Chantrapromma, Boonlerd Nilwanna, Thawanrat Kobkeatthawin, Nawong Boonnak.   

Abstract

The title compound, C16H16N4O7, is close to being planar, with a dihedral angle of 3.15 (11)° between the benzene rings. The meth-oxy groups at the ortho- and para-positions of the 2,4,5-tri-meth-oxy-phenyl group are almost coplanar with the ring [deviations of the C atoms = 0.017 (2) and -0.025 (2) Å, respectively], whereas the meta-meth-oxy group deviates slightly [C-atom displacement = 0.162 (2) Å]. Both the ortho- and para-nitro groups are close to being coplanar with their attached ring [dihedral angles = 7.81 (12) and 8.56 (11)°, respectively]. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds involving the same H atom as the intra-molecular bond generate R 2 (2)(12) loops. The dimers are linked by weak C-H⋯O inter-actions into sheets parallel to the (10-4) plane and the sheets are stacked by π-π inter-actions, with a centroid-centroid distance of 3.5974 (14) Å.

Entities:  

Year:  2013        PMID: 24109301      PMCID: PMC3793714          DOI: 10.1107/S1600536813018345

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Fun et al. (2011 ▶, 2012 ▶). For background to the biological activity of hydro­zones, see: Angelusiu et al. (2010 ▶); Cui et al. (2010 ▶); Gokce et al. (2009 ▶); Molyneux (2004 ▶); Török et al. (2013 ▶); Wang et al. (2009 ▶).

Experimental

Crystal data

C16H16N4O7 M = 376.33 Monoclinic, a = 8.0273 (13) Å b = 15.048 (2) Å c = 13.686 (2) Å β = 101.546 (3)° V = 1619.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.33 × 0.06 × 0.05 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.961, T max = 0.994 14507 measured reflections 4296 independent reflections 2385 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.144 S = 1.01 4296 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813018345/hb7102sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018345/hb7102Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018345/hb7102Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N4O7F(000) = 784
Mr = 376.33Dx = 1.543 Mg m3
Monoclinic, P21/cMelting point = 528–529 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 8.0273 (13) ÅCell parameters from 4296 reflections
b = 15.048 (2) Åθ = 2.0–29.0°
c = 13.686 (2) ŵ = 0.12 mm1
β = 101.546 (3)°T = 100 K
V = 1619.7 (4) Å3Needle, red
Z = 40.33 × 0.06 × 0.05 mm
Bruker SMART APEXII DUO CCD diffractometer4296 independent reflections
Radiation source: fine-focus sealed tube2385 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.072
φ and ω scansθmax = 29.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.961, Tmax = 0.994k = −17→20
14507 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0544P)2 + 0.5503P] where P = (Fo2 + 2Fc2)/3
4296 reflections(Δ/σ)max < 0.001
251 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.33 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.12652 (19)0.44523 (11)0.52056 (12)0.0210 (4)
O21.38293 (19)0.39446 (11)0.56829 (12)0.0204 (4)
O31.4973 (2)0.08730 (12)0.60481 (14)0.0302 (5)
O41.2974 (2)−0.00920 (12)0.55543 (14)0.0292 (5)
O50.33101 (19)0.48609 (11)0.33462 (13)0.0226 (4)
O6−0.05504 (19)0.24861 (11)0.19418 (12)0.0201 (4)
O70.18289 (19)0.13357 (11)0.24418 (12)0.0187 (4)
N10.8715 (2)0.33762 (14)0.44831 (15)0.0166 (5)
H1N10.891 (4)0.394 (2)0.466 (2)0.041 (9)*
N20.7106 (2)0.30856 (14)0.40437 (14)0.0171 (5)
N31.2304 (2)0.38263 (13)0.53664 (14)0.0164 (5)
N41.3513 (2)0.06807 (14)0.56381 (15)0.0194 (5)
C10.9955 (3)0.27522 (16)0.46967 (16)0.0142 (5)
C21.1676 (3)0.29321 (15)0.51555 (16)0.0149 (5)
C31.2840 (3)0.22554 (16)0.54419 (16)0.0153 (5)
H3A1.39510.23860.57560.018*
C41.2341 (3)0.13928 (16)0.52577 (17)0.0162 (5)
C51.0706 (3)0.11895 (17)0.47365 (17)0.0182 (6)
H5A1.04070.06020.45790.022*
C60.9552 (3)0.18490 (16)0.44595 (16)0.0169 (5)
H6A0.84720.17050.41060.020*
C70.5914 (3)0.36708 (16)0.38720 (16)0.0163 (5)
H7A0.61280.42610.40560.020*
C80.4214 (3)0.33803 (16)0.33783 (16)0.0144 (5)
C90.2900 (3)0.39983 (16)0.31141 (17)0.0157 (5)
C100.1277 (3)0.37208 (16)0.26307 (17)0.0163 (5)
H10A0.04090.41350.24530.020*
C110.0970 (3)0.28289 (16)0.24183 (16)0.0151 (5)
C120.2279 (3)0.21986 (16)0.26910 (16)0.0155 (5)
C130.3866 (3)0.24807 (16)0.31568 (16)0.0158 (5)
H13A0.47330.20650.33300.019*
C140.2019 (3)0.55210 (17)0.3101 (2)0.0251 (6)
H14A0.24730.60900.33330.038*
H14B0.10840.53770.34140.038*
H14C0.16290.55400.23910.038*
C15−0.1945 (3)0.30917 (17)0.16478 (18)0.0212 (6)
H15A−0.29110.27750.12840.032*
H15B−0.16230.35490.12320.032*
H15C−0.22330.33560.22310.032*
C160.3069 (3)0.06688 (16)0.28081 (18)0.0208 (6)
H16A0.26000.00920.26230.031*
H16B0.33800.07090.35210.031*
H16C0.40580.07590.25250.031*
U11U22U33U12U13U23
O10.0171 (8)0.0103 (9)0.0338 (9)0.0024 (7)0.0009 (7)−0.0002 (7)
O20.0122 (8)0.0163 (9)0.0305 (9)−0.0031 (7)−0.0009 (7)−0.0019 (7)
O30.0140 (8)0.0199 (10)0.0520 (11)0.0024 (7)−0.0048 (8)0.0026 (9)
O40.0239 (9)0.0111 (9)0.0488 (11)−0.0020 (7)−0.0020 (8)0.0018 (8)
O50.0148 (8)0.0091 (9)0.0412 (10)0.0022 (7)−0.0008 (8)−0.0012 (8)
O60.0118 (8)0.0155 (9)0.0305 (9)0.0012 (7)−0.0021 (7)−0.0011 (7)
O70.0148 (8)0.0106 (9)0.0286 (9)0.0013 (7)−0.0007 (7)−0.0019 (7)
N10.0112 (9)0.0111 (11)0.0257 (10)−0.0010 (8)−0.0004 (8)0.0006 (9)
N20.0099 (9)0.0170 (11)0.0232 (9)0.0000 (8)0.0001 (8)−0.0001 (8)
N30.0161 (9)0.0110 (10)0.0211 (10)0.0015 (8)0.0017 (8)−0.0002 (8)
N40.0156 (10)0.0123 (11)0.0301 (11)0.0019 (8)0.0039 (9)0.0005 (9)
C10.0118 (10)0.0128 (12)0.0180 (10)0.0013 (9)0.0032 (9)0.0007 (9)
C20.0138 (10)0.0102 (12)0.0198 (10)−0.0005 (9)0.0016 (9)−0.0008 (9)
C30.0110 (10)0.0139 (12)0.0204 (11)0.0008 (9)0.0014 (9)−0.0006 (9)
C40.0131 (11)0.0128 (12)0.0216 (11)0.0039 (9)0.0012 (9)0.0010 (10)
C50.0166 (11)0.0157 (13)0.0223 (12)−0.0014 (10)0.0035 (10)−0.0005 (10)
C60.0107 (10)0.0177 (13)0.0212 (11)−0.0006 (9)0.0004 (9)0.0011 (10)
C70.0153 (11)0.0112 (12)0.0215 (11)−0.0009 (9)0.0018 (9)−0.0002 (9)
C80.0102 (10)0.0125 (12)0.0203 (11)0.0012 (9)0.0027 (9)0.0013 (9)
C90.0153 (11)0.0100 (12)0.0213 (11)−0.0011 (9)0.0024 (9)−0.0007 (9)
C100.0133 (11)0.0125 (12)0.0222 (11)0.0040 (9)0.0013 (9)0.0017 (10)
C110.0104 (10)0.0148 (13)0.0199 (11)−0.0008 (9)0.0025 (9)0.0000 (9)
C120.0160 (11)0.0107 (12)0.0198 (11)−0.0001 (9)0.0035 (9)−0.0008 (9)
C130.0133 (11)0.0115 (12)0.0220 (11)0.0041 (9)0.0019 (9)0.0005 (9)
C140.0203 (12)0.0119 (13)0.0408 (14)0.0062 (10)0.0006 (11)0.0003 (11)
C150.0122 (11)0.0199 (14)0.0292 (12)0.0048 (10)−0.0014 (10)0.0000 (11)
C160.0177 (12)0.0122 (13)0.0312 (12)0.0049 (10)0.0018 (10)0.0015 (10)
O1—N31.248 (2)C5—C61.359 (3)
O2—N31.227 (2)C5—H5A0.9300
O3—N41.228 (2)C6—H6A0.9300
O4—N41.238 (3)C7—C81.463 (3)
O5—C91.361 (3)C7—H7A0.9300
O5—C141.427 (3)C8—C91.398 (3)
O6—C111.364 (2)C8—C131.403 (3)
O6—C151.437 (3)C9—C101.401 (3)
O7—C121.372 (3)C10—C111.385 (3)
O7—C161.432 (3)C10—H10A0.9300
N1—C11.357 (3)C11—C121.410 (3)
N1—N21.382 (2)C12—C131.373 (3)
N1—H1N10.88 (3)C13—H13A0.9300
N2—C71.287 (3)C14—H14A0.9600
N3—C21.446 (3)C14—H14B0.9600
N4—C41.452 (3)C14—H14C0.9600
C1—C61.420 (3)C15—H15A0.9600
C1—C21.424 (3)C15—H15B0.9600
C2—C31.385 (3)C15—H15C0.9600
C3—C41.367 (3)C16—H16A0.9600
C3—H3A0.9300C16—H16B0.9600
C4—C51.396 (3)C16—H16C0.9600
C9—O5—C14118.60 (17)C9—C8—C7120.4 (2)
C11—O6—C15117.78 (18)C13—C8—C7121.0 (2)
C12—O7—C16116.49 (16)O5—C9—C8116.05 (18)
C1—N1—N2117.2 (2)O5—C9—C10123.6 (2)
C1—N1—H1N1121.4 (19)C8—C9—C10120.4 (2)
N2—N1—H1N1121.2 (19)C11—C10—C9119.8 (2)
C7—N2—N1117.3 (2)C11—C10—H10A120.1
O2—N3—O1122.47 (19)C9—C10—H10A120.1
O2—N3—C2119.27 (19)O6—C11—C10124.9 (2)
O1—N3—C2118.25 (17)O6—C11—C12114.9 (2)
O3—N4—O4123.2 (2)C10—C11—C12120.29 (19)
O3—N4—C4118.7 (2)O7—C12—C13125.6 (2)
O4—N4—C4118.03 (17)O7—C12—C11115.18 (18)
N1—C1—C6119.28 (19)C13—C12—C11119.2 (2)
N1—C1—C2124.6 (2)C12—C13—C8121.6 (2)
C6—C1—C2116.1 (2)C12—C13—H13A119.2
C3—C2—C1121.7 (2)C8—C13—H13A119.2
C3—C2—N3116.05 (18)O5—C14—H14A109.5
C1—C2—N3122.3 (2)O5—C14—H14B109.5
C4—C3—C2119.31 (19)H14A—C14—H14B109.5
C4—C3—H3A120.3O5—C14—H14C109.5
C2—C3—H3A120.3H14A—C14—H14C109.5
C3—C4—C5120.9 (2)H14B—C14—H14C109.5
C3—C4—N4119.29 (18)O6—C15—H15A109.5
C5—C4—N4119.8 (2)O6—C15—H15B109.5
C6—C5—C4120.1 (2)H15A—C15—H15B109.5
C6—C5—H5A120.0O6—C15—H15C109.5
C4—C5—H5A120.0H15A—C15—H15C109.5
C5—C6—C1121.61 (19)H15B—C15—H15C109.5
C5—C6—H6A119.2O7—C16—H16A109.5
C1—C6—H6A119.2O7—C16—H16B109.5
N2—C7—C8118.1 (2)H16A—C16—H16B109.5
N2—C7—H7A121.0O7—C16—H16C109.5
C8—C7—H7A121.0H16A—C16—H16C109.5
C9—C8—C13118.60 (19)H16B—C16—H16C109.5
C1—N1—N2—C7177.6 (2)N2—C7—C8—C9−175.7 (2)
N2—N1—C1—C60.3 (3)N2—C7—C8—C134.0 (4)
N2—N1—C1—C2−179.5 (2)C14—O5—C9—C8−179.6 (2)
N1—C1—C2—C3173.6 (2)C14—O5—C9—C101.0 (4)
C6—C1—C2—C3−6.2 (4)C13—C8—C9—O5−179.9 (2)
N1—C1—C2—N3−5.3 (4)C7—C8—C9—O5−0.2 (3)
C6—C1—C2—N3174.9 (2)C13—C8—C9—C10−0.5 (4)
O2—N3—C2—C37.3 (3)C7—C8—C9—C10179.2 (2)
O1—N3—C2—C3−173.5 (2)O5—C9—C10—C11179.7 (2)
O2—N3—C2—C1−173.7 (2)C8—C9—C10—C110.4 (4)
O1—N3—C2—C15.4 (3)C15—O6—C11—C10−0.8 (3)
C1—C2—C3—C41.7 (4)C15—O6—C11—C12179.6 (2)
N3—C2—C3—C4−179.4 (2)C9—C10—C11—O6−179.2 (2)
C2—C3—C4—C53.6 (4)C9—C10—C11—C120.3 (4)
C2—C3—C4—N4−174.4 (2)C16—O7—C12—C138.0 (4)
O3—N4—C4—C3−5.7 (4)C16—O7—C12—C11−173.1 (2)
O4—N4—C4—C3172.5 (2)O6—C11—C12—O7−0.3 (3)
O3—N4—C4—C5176.2 (2)C10—C11—C12—O7−179.9 (2)
O4—N4—C4—C5−5.6 (3)O6—C11—C12—C13178.7 (2)
C3—C4—C5—C6−4.2 (4)C10—C11—C12—C13−0.9 (4)
N4—C4—C5—C6173.9 (2)O7—C12—C13—C8179.6 (2)
C4—C5—C6—C1−0.8 (4)C11—C12—C13—C80.7 (4)
N1—C1—C6—C5−174.1 (2)C9—C8—C13—C120.0 (4)
C2—C1—C6—C55.7 (3)C7—C8—C13—C12−179.8 (2)
N1—N2—C7—C8178.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.89 (3)2.04 (3)2.642 (3)124 (3)
N1—H1N1···O1i0.89 (3)2.43 (3)3.295 (3)164 (3)
C14—H14A···O6ii0.962.593.180 (3)120
C16—H16C···O2iii0.962.533.143 (3)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O10.89 (3)2.04 (3)2.642 (3)124 (3)
N1—H1N1⋯O1i 0.89 (3)2.43 (3)3.295 (3)164 (3)
C14—H14A⋯O6ii 0.962.593.180 (3)120
C16—H16C⋯O2iii 0.962.533.143 (3)122

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Necmi Dege; Md Serajul Haque Faizi; Onur Erman Doğan; Erbil Ağar; Irina A Golenya
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-05-10

5.  (E)-1-(2,4-Di-nitro-phen-yl)-2-(3-eth-oxy-4-hy-droxy-benzyl-idene)hydrazine.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; Pumsak Ruanwas; Thawanrat Kobkeatthawin; C S Chidan Kumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-24
  5 in total

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