| Literature DB >> 29250356 |
Md Serajul Haque Faizi1, Ashanul Haque1, Mustafa Dege2, Necmi Dege3, Maria L Malysheva4.
Abstract
The title compound, C20H27N3O, was synthesized by condensation reaction of 3,5-di-tert-butyl-4-hy-droxy-benzaldehyde and 2-hydrazinyl-pyridine, and crystallizes in the centrosymmetric monoclinic space group C2/c. The conformation about the C=N bond is E. The dihedral angle between the rings is 18.1 (3)°. An inter-molecular N-H⋯N hydrogen bond generates an R22(8) ring motif. In the crystal, N-H⋯N hydrogen bonds connect pairs of mol-ecules, forming dimers. Density functional theory (DFT) optimized structures at the B3LYP/6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state.Entities:
Keywords: 2- hydrazinopyridine; 3,5-di-tert-butyl-4-hydroxybenzaldehyde; Schiff base; crystal structure; hydrazine; hydrogen bonding
Year: 2017 PMID: 29250356 PMCID: PMC5730293 DOI: 10.1107/S2056989017011707
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 40% probability level.
Figure 2Molecules of the title compound forming a dimer through N—H⋯N hydrogen bonds, generating an (8) ring motif.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯N3i | 0.86 | 2.23 | 3.062 (8) | 162 |
Symmetry code: (i) .
Figure 3Part of the structure exhibiting weak C—H⋯O hydrogen bonds and C—H⋯π interactions (shown as dashed lines) along a axis.
Comparison of selected observed (X-ray data) and calculated (DFT) geometric parameters (Å, °)
| Parameter | X-ray | B3LYP/6–311G(d,p) |
|---|---|---|
| O1—C1 | 1.370 (6) | 1.370 |
| C15—N1 | 1.253 (7) | 1.252 |
| N3—C20 | 1.386 (8) | 1.386 |
| N1—N2 | 1.396 (7) | 1.395 |
| N3—C16 | 1.292 (8) | 1.292 |
| C16—N2—N1 | 122.6 (6) | 122.7 |
| C15—N1—N2 | 118.8 (6) | 118.9 |
| N1—C15—C4 | 121.9 (6) | 121.9 |
| N2—N1—C15—C4 | 177.9 (5) | 177.8 |
Figure 4Electron distribution of the HOMO-1, HOMO, LUMO and LUMO+1 energy levels for the title compound.
Experimental details
| Crystal data | |
| Chemical formula | C20H27N3O |
|
| 325.44 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 29.5091 (15), 6.2270 (4), 20.2703 (10) |
| β (°) | 91.130 (4) |
|
| 3724.0 (4) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.07 |
| Crystal size (mm) | 0.33 × 0.24 × 0.08 |
| Data collection | |
| Diffractometer | Stoe IPDS 2 |
| Absorption correction | Integration ( |
|
| 0.978, 0.994 |
| No. of measured, independent and observed [ | 17357, 3468, 1430 |
|
| 0.097 |
| (sin θ/λ)max (Å−1) | 0.606 |
| Refinement | |
|
| 0.101, 0.321, 0.96 |
| No. of reflections | 3468 |
| No. of parameters | 222 |
| No. of restraints | 4 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.95, −0.34 |
Computer programs: X-AREA and X-RED32 (Stoe & Cie, 2002 ▸), SHELXT (Sheldrick 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C20H27N3O | |
| Monoclinic, | Mo |
| Cell parameters from 10906 reflections | |
| θ = 1.4–26.8° | |
| µ = 0.07 mm−1 | |
| β = 91.130 (4)° | |
| Stick, red | |
| 0.33 × 0.24 × 0.08 mm |
| Stoe IPDS 2 diffractometer | 3468 independent reflections |
| Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 1430 reflections with |
| Plane graphite monochromator | |
| Detector resolution: 6.67 pixels mm-1 | θmax = 25.5°, θmin = 1.4° |
| rotation method scans | |
| Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | |
| 17357 measured reflections |
| Refinement on | 4 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3468 reflections | Δρmax = 0.95 e Å−3 |
| 222 parameters | Δρmin = −0.34 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.44818 (13) | 0.9043 (6) | 0.53805 (18) | 0.0870 (13) | |
| C6 | 0.40894 (16) | 0.6560 (8) | 0.4671 (2) | 0.0602 (12) | |
| C1 | 0.41473 (17) | 0.7532 (8) | 0.5303 (2) | 0.0643 (13) | |
| N3 | 0.25835 (18) | −0.3445 (11) | 0.4118 (3) | 0.0956 (15) | |
| C5 | 0.37623 (17) | 0.4983 (8) | 0.4620 (2) | 0.0653 (13) | |
| H5 | 0.371669 | 0.430688 | 0.421532 | 0.078* | |
| C2 | 0.38832 (17) | 0.6977 (7) | 0.5845 (2) | 0.0616 (13) | |
| C7 | 0.43754 (17) | 0.7232 (8) | 0.4082 (2) | 0.0652 (13) | |
| C4 | 0.34989 (16) | 0.4362 (8) | 0.5145 (2) | 0.0630 (13) | |
| C3 | 0.35632 (17) | 0.5396 (8) | 0.5744 (2) | 0.0682 (13) | |
| H3 | 0.338180 | 0.500452 | 0.609405 | 0.082* | |
| C11 | 0.39633 (18) | 0.8015 (8) | 0.6539 (2) | 0.0692 (14) | |
| C16 | 0.2803 (2) | −0.1665 (11) | 0.4050 (3) | 0.0854 (18) | |
| C15 | 0.31797 (19) | 0.2599 (9) | 0.5093 (3) | 0.0753 (15) | |
| H15 | 0.299604 | 0.229578 | 0.544903 | 0.090* | |
| N1 | 0.31443 (18) | 0.1472 (10) | 0.4583 (3) | 0.1040 (17) | |
| C9 | 0.48786 (17) | 0.6685 (9) | 0.4218 (3) | 0.0788 (15) | |
| H9A | 0.498240 | 0.741762 | 0.460985 | 0.118* | |
| H9B | 0.491083 | 0.516377 | 0.427934 | 0.118* | |
| H9C | 0.505562 | 0.713463 | 0.385090 | 0.118* | |
| C14 | 0.3634 (2) | 0.7150 (10) | 0.7038 (3) | 0.0892 (18) | |
| H14A | 0.367140 | 0.562344 | 0.707671 | 0.134* | |
| H14B | 0.369399 | 0.781038 | 0.745907 | 0.134* | |
| H14C | 0.332975 | 0.746899 | 0.689537 | 0.134* | |
| C8 | 0.4238 (2) | 0.6008 (10) | 0.3455 (2) | 0.0842 (17) | |
| H8A | 0.442361 | 0.646829 | 0.309754 | 0.126* | |
| H8B | 0.427952 | 0.449608 | 0.352592 | 0.126* | |
| H8C | 0.392568 | 0.629283 | 0.334777 | 0.126* | |
| C10 | 0.4322 (2) | 0.9641 (8) | 0.3928 (3) | 0.0794 (15) | |
| H10A | 0.440539 | 1.046680 | 0.431129 | 0.119* | |
| H10B | 0.451519 | 1.002048 | 0.357028 | 0.119* | |
| H10C | 0.401251 | 0.993870 | 0.380523 | 0.119* | |
| N2 | 0.2841 (2) | −0.0247 (10) | 0.4575 (3) | 0.1095 (18) | |
| H2 | 0.267022 | −0.043331 | 0.490969 | 0.131* | |
| C13 | 0.3886 (2) | 1.0443 (9) | 0.6502 (3) | 0.0920 (19) | |
| H13A | 0.408889 | 1.106044 | 0.618980 | 0.138* | |
| H13B | 0.357876 | 1.072581 | 0.636557 | 0.138* | |
| H13C | 0.394300 | 1.106719 | 0.692927 | 0.138* | |
| C20 | 0.2570 (2) | −0.4838 (11) | 0.3587 (4) | 0.0966 (19) | |
| H20 | 0.241637 | −0.613249 | 0.362703 | 0.116* | |
| C17 | 0.3004 (2) | −0.1115 (11) | 0.3471 (4) | 0.0971 (19) | |
| H17 | 0.314885 | 0.020392 | 0.343305 | 0.117* | |
| C12 | 0.4451 (2) | 0.7483 (11) | 0.6794 (3) | 0.0922 (18) | |
| H12A | 0.450337 | 0.816345 | 0.721370 | 0.138* | |
| H12B | 0.466707 | 0.799996 | 0.648434 | 0.138* | |
| H12C | 0.448268 | 0.595631 | 0.684231 | 0.138* | |
| C19 | 0.2775 (2) | −0.4384 (12) | 0.3005 (3) | 0.0912 (18) | |
| H19 | 0.276520 | −0.535037 | 0.265545 | 0.109* | |
| C18 | 0.2992 (2) | −0.2481 (13) | 0.2956 (3) | 0.098 (2) | |
| H18 | 0.313282 | −0.211489 | 0.256542 | 0.117* | |
| H1 | 0.4585 (7) | 0.975 (3) | 0.5674 (9) | 0.22 (5)* |
| O1 | 0.101 (3) | 0.082 (3) | 0.078 (2) | −0.042 (2) | 0.008 (2) | −0.013 (2) |
| C6 | 0.065 (3) | 0.054 (3) | 0.061 (3) | −0.006 (2) | 0.005 (2) | 0.002 (2) |
| C1 | 0.074 (3) | 0.056 (3) | 0.063 (3) | −0.012 (3) | 0.006 (2) | −0.005 (2) |
| N3 | 0.086 (3) | 0.110 (4) | 0.091 (3) | 0.011 (3) | 0.016 (3) | 0.009 (3) |
| C5 | 0.080 (3) | 0.057 (3) | 0.058 (3) | −0.008 (3) | 0.001 (2) | 0.002 (2) |
| C2 | 0.073 (3) | 0.049 (3) | 0.063 (3) | 0.001 (2) | 0.003 (2) | −0.002 (2) |
| C7 | 0.074 (3) | 0.061 (3) | 0.061 (3) | −0.009 (2) | 0.011 (2) | 0.001 (2) |
| C4 | 0.066 (3) | 0.054 (3) | 0.069 (3) | −0.006 (2) | 0.004 (2) | 0.003 (2) |
| C3 | 0.069 (3) | 0.064 (3) | 0.072 (3) | −0.008 (3) | 0.009 (2) | 0.007 (3) |
| C11 | 0.083 (3) | 0.064 (3) | 0.062 (3) | −0.002 (3) | 0.006 (3) | −0.002 (2) |
| C16 | 0.094 (4) | 0.074 (4) | 0.087 (4) | 0.003 (4) | −0.014 (4) | −0.012 (4) |
| C15 | 0.084 (4) | 0.070 (3) | 0.071 (3) | −0.014 (3) | −0.003 (3) | −0.014 (3) |
| N1 | 0.096 (4) | 0.099 (4) | 0.116 (4) | −0.026 (3) | 0.007 (3) | 0.020 (3) |
| C9 | 0.075 (3) | 0.079 (4) | 0.082 (3) | −0.002 (3) | 0.013 (3) | −0.002 (3) |
| C14 | 0.109 (4) | 0.096 (4) | 0.064 (3) | 0.011 (4) | 0.025 (3) | 0.004 (3) |
| C8 | 0.101 (4) | 0.089 (4) | 0.062 (3) | −0.016 (3) | 0.000 (3) | −0.006 (3) |
| C10 | 0.089 (4) | 0.066 (3) | 0.083 (3) | −0.006 (3) | 0.010 (3) | 0.015 (3) |
| N2 | 0.115 (4) | 0.109 (4) | 0.105 (4) | −0.034 (4) | 0.020 (3) | −0.002 (3) |
| C13 | 0.130 (5) | 0.062 (4) | 0.084 (4) | 0.003 (3) | 0.015 (4) | −0.011 (3) |
| C20 | 0.087 (4) | 0.089 (5) | 0.114 (5) | −0.017 (4) | 0.009 (4) | 0.006 (4) |
| C17 | 0.096 (5) | 0.089 (5) | 0.106 (5) | −0.009 (4) | −0.003 (4) | 0.010 (4) |
| C12 | 0.094 (4) | 0.111 (5) | 0.071 (3) | 0.007 (4) | −0.005 (3) | −0.006 (3) |
| C19 | 0.083 (4) | 0.106 (5) | 0.085 (4) | −0.014 (4) | 0.013 (3) | −0.022 (4) |
| C18 | 0.087 (4) | 0.127 (6) | 0.081 (4) | −0.013 (4) | 0.007 (3) | −0.002 (4) |
| O1—C1 | 1.370 (6) | C9—H9A | 0.9600 |
| O1—H1 | 0.794 (15) | C9—H9B | 0.9600 |
| C6—C5 | 1.379 (6) | C9—H9C | 0.9600 |
| C6—C1 | 1.423 (6) | C14—H14A | 0.9600 |
| C6—C7 | 1.534 (7) | C14—H14B | 0.9600 |
| C1—C2 | 1.403 (7) | C14—H14C | 0.9600 |
| N3—C16 | 1.292 (8) | C8—H8A | 0.9600 |
| N3—C20 | 1.383 (8) | C8—H8B | 0.9600 |
| C5—C4 | 1.385 (7) | C8—H8C | 0.9600 |
| C5—H5 | 0.9300 | C10—H10A | 0.9600 |
| C2—C3 | 1.377 (7) | C10—H10B | 0.9600 |
| C2—C11 | 1.561 (7) | C10—H10C | 0.9600 |
| C7—C8 | 1.530 (7) | N2—H2 | 0.8600 |
| C7—C10 | 1.540 (7) | C13—H13A | 0.9600 |
| C7—C9 | 1.543 (7) | C13—H13B | 0.9600 |
| C4—C3 | 1.384 (7) | C13—H13C | 0.9600 |
| C4—C15 | 1.449 (7) | C20—C19 | 1.364 (9) |
| C3—H3 | 0.9300 | C20—H20 | 0.9300 |
| C11—C14 | 1.515 (7) | C17—C18 | 1.347 (9) |
| C11—C13 | 1.531 (7) | C17—H17 | 0.9300 |
| C11—C12 | 1.555 (7) | C12—H12A | 0.9600 |
| C16—C17 | 1.369 (9) | C12—H12B | 0.9600 |
| C16—N2 | 1.386 (8) | C12—H12C | 0.9600 |
| C15—N1 | 1.253 (7) | C19—C18 | 1.351 (9) |
| C15—H15 | 0.9300 | C19—H19 | 0.9300 |
| N1—N2 | 1.396 (7) | C18—H18 | 0.9300 |
| C1—O1—H1 | 136.7 (16) | C11—C14—H14A | 109.5 |
| C5—C6—C1 | 116.2 (4) | C11—C14—H14B | 109.5 |
| C5—C6—C7 | 122.0 (4) | H14A—C14—H14B | 109.5 |
| C1—C6—C7 | 121.7 (4) | C11—C14—H14C | 109.5 |
| O1—C1—C2 | 119.3 (4) | H14A—C14—H14C | 109.5 |
| O1—C1—C6 | 117.9 (4) | H14B—C14—H14C | 109.5 |
| C2—C1—C6 | 122.8 (4) | C7—C8—H8A | 109.5 |
| C16—N3—C20 | 117.4 (5) | C7—C8—H8B | 109.5 |
| C6—C5—C4 | 122.9 (4) | H8A—C8—H8B | 109.5 |
| C6—C5—H5 | 118.5 | C7—C8—H8C | 109.5 |
| C4—C5—H5 | 118.5 | H8A—C8—H8C | 109.5 |
| C3—C2—C1 | 116.7 (4) | H8B—C8—H8C | 109.5 |
| C3—C2—C11 | 121.5 (5) | C7—C10—H10A | 109.5 |
| C1—C2—C11 | 121.8 (4) | C7—C10—H10B | 109.5 |
| C8—C7—C6 | 111.8 (4) | H10A—C10—H10B | 109.5 |
| C8—C7—C10 | 107.0 (4) | C7—C10—H10C | 109.5 |
| C6—C7—C10 | 111.6 (4) | H10A—C10—H10C | 109.5 |
| C8—C7—C9 | 106.1 (4) | H10B—C10—H10C | 109.5 |
| C6—C7—C9 | 110.0 (4) | C16—N2—N1 | 122.6 (6) |
| C10—C7—C9 | 110.2 (4) | C16—N2—H2 | 118.7 |
| C3—C4—C5 | 118.3 (4) | N1—N2—H2 | 118.7 |
| C3—C4—C15 | 119.6 (5) | C11—C13—H13A | 109.5 |
| C5—C4—C15 | 122.0 (5) | C11—C13—H13B | 109.5 |
| C2—C3—C4 | 123.1 (5) | H13A—C13—H13B | 109.5 |
| C2—C3—H3 | 118.5 | C11—C13—H13C | 109.5 |
| C4—C3—H3 | 118.5 | H13A—C13—H13C | 109.5 |
| C14—C11—C13 | 106.7 (5) | H13B—C13—H13C | 109.5 |
| C14—C11—C12 | 107.6 (4) | C19—C20—N3 | 122.5 (6) |
| C13—C11—C12 | 111.2 (5) | C19—C20—H20 | 118.7 |
| C14—C11—C2 | 111.5 (4) | N3—C20—H20 | 118.7 |
| C13—C11—C2 | 110.3 (4) | C18—C17—C16 | 120.1 (7) |
| C12—C11—C2 | 109.5 (4) | C18—C17—H17 | 120.0 |
| N3—C16—C17 | 122.2 (6) | C16—C17—H17 | 120.0 |
| N3—C16—N2 | 119.8 (7) | C11—C12—H12A | 109.5 |
| C17—C16—N2 | 118.0 (6) | C11—C12—H12B | 109.5 |
| N1—C15—C4 | 121.9 (6) | H12A—C12—H12B | 109.5 |
| N1—C15—H15 | 119.1 | C11—C12—H12C | 109.5 |
| C4—C15—H15 | 119.1 | H12A—C12—H12C | 109.5 |
| C15—N1—N2 | 118.8 (6) | H12B—C12—H12C | 109.5 |
| C7—C9—H9A | 109.5 | C18—C19—C20 | 117.6 (6) |
| C7—C9—H9B | 109.5 | C18—C19—H19 | 121.2 |
| H9A—C9—H9B | 109.5 | C20—C19—H19 | 121.2 |
| C7—C9—H9C | 109.5 | C17—C18—C19 | 120.1 (6) |
| H9A—C9—H9C | 109.5 | C17—C18—H18 | 119.9 |
| H9B—C9—H9C | 109.5 | C19—C18—H18 | 119.9 |
| C5—C6—C1—O1 | 177.4 (4) | C15—C4—C3—C2 | 175.1 (5) |
| C7—C6—C1—O1 | −2.6 (7) | C3—C2—C11—C14 | −3.1 (7) |
| C5—C6—C1—C2 | −1.4 (7) | C1—C2—C11—C14 | 179.9 (5) |
| C7—C6—C1—C2 | 178.6 (5) | C3—C2—C11—C13 | −121.5 (5) |
| C1—C6—C5—C4 | 0.4 (7) | C1—C2—C11—C13 | 61.6 (6) |
| C7—C6—C5—C4 | −179.6 (5) | C3—C2—C11—C12 | 115.8 (6) |
| O1—C1—C2—C3 | −177.8 (4) | C1—C2—C11—C12 | −61.1 (6) |
| C6—C1—C2—C3 | 1.0 (7) | C20—N3—C16—C17 | 2.1 (9) |
| O1—C1—C2—C11 | −0.7 (7) | C20—N3—C16—N2 | −177.6 (6) |
| C6—C1—C2—C11 | 178.1 (4) | C3—C4—C15—N1 | −172.4 (6) |
| C5—C6—C7—C8 | 1.9 (7) | C5—C4—C15—N1 | 4.0 (8) |
| C1—C6—C7—C8 | −178.1 (5) | C4—C15—N1—N2 | 177.9 (5) |
| C5—C6—C7—C10 | 121.7 (5) | N3—C16—N2—N1 | 166.7 (6) |
| C1—C6—C7—C10 | −58.3 (6) | C17—C16—N2—N1 | −13.1 (9) |
| C5—C6—C7—C9 | −115.6 (5) | C15—N1—N2—C16 | −175.4 (6) |
| C1—C6—C7—C9 | 64.4 (6) | C16—N3—C20—C19 | −0.5 (9) |
| C6—C5—C4—C3 | 1.0 (7) | N3—C16—C17—C18 | −2.5 (10) |
| C6—C5—C4—C15 | −175.5 (5) | N2—C16—C17—C18 | 177.3 (6) |
| C1—C2—C3—C4 | 0.5 (7) | N3—C20—C19—C18 | −0.8 (10) |
| C11—C2—C3—C4 | −176.6 (5) | C16—C17—C18—C19 | 1.1 (10) |
| C5—C4—C3—C2 | −1.5 (8) | C20—C19—C18—C17 | 0.5 (10) |
| H··· | ||||
| N2—H2···N3i | 0.86 | 2.23 | 3.062 (8) | 162 |