Literature DB >> 24764900

1-(2,4-Di-nitro-phen-yl)-2-[(E)-(3,4,5-tri-meth-oxy-benzyl-idene)]hydrazine.

Suchada Chantrapromma1, Pumsak Ruanwas1, Nawong Boonnak2, C S Chidan Kumar3, Hoong-Kun Fun3.   

Abstract

Mol-ecules of the title compound, C16H16N4O7, are not planar with a dihedral angle of 5.50 (11)° between the substituted benzene rings. The two meta-meth-oxy groups of the 3,4,5-tri-meth-oxy-benzene moiety lie in the plane of the attached ring [Cmeth-yl-O-C-C torsion angles -0.1 (4)° and -3.7 (3)°] while the para-meth-oxy substituent lies out of the plane [Cmeth-yl-O-C-C, -86.0 (3)°]. An intra-molecular N-H⋯O hydrogen bond involving the 2-nitro substituent generates an S(6) ring motif. In the crystal structure, mol-ecules are linked by weak C-H⋯O inter-actions into screw chains, that are arranged into a sheet parallel to the bc plane. These sheets are connected by π-π stacking inter-actions between the nitro and meth-oxy substituted aromatic rings with a centroid-centroid separation of 3.9420 (13) Å. C-H⋯π contacts further stabilize the two-dimensional network.

Entities:  

Year:  2014        PMID: 24764900      PMCID: PMC3998339          DOI: 10.1107/S1600536814001238

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of hydro­zones, see: Angelusiu et al. (2010 ▶); Cui et al. (2010 ▶), Gokce et al. (2009 ▶); Molyneux (2004 ▶); Sathyadevi et al. (2012 ▶); Wang et al. (2009 ▶). For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Fun et al. (2011 ▶, 2012 ▶, 2013 ▶).

Experimental

Crystal data

C16H16N4O7 M = 376.33 Orthorhombic, a = 7.4724 (4) Å b = 14.3106 (7) Å c = 16.1549 (7) Å V = 1727.52 (15) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.58 × 0.30 × 0.24 mm

Data collection

Bruker APEXII CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.936, T max = 0.972 20053 measured reflections 2855 independent reflections 2243 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.107 S = 1.08 2855 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶), Mercury (Macrae et al., 2008 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814001238/sj5380sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814001238/sj5380Isup2.hkl CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H16N4O7Dx = 1.447 Mg m3
Mr = 376.33Melting point = 496–497 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2855 reflections
a = 7.4724 (4) Åθ = 2.5–30.0°
b = 14.3106 (7) ŵ = 0.12 mm1
c = 16.1549 (7) ÅT = 100 K
V = 1727.52 (15) Å3Block, orange
Z = 40.58 × 0.30 × 0.24 mm
F(000) = 784
Bruker APEXII CCD area detector diffractometer2855 independent reflections
Radiation source: sealed tube2243 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
φ and ω scansθmax = 30.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.936, Tmax = 0.972k = −17→20
20053 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0489P)2 + 0.1811P] where P = (Fo2 + 2Fc2)/3
2855 reflections(Δ/σ)max = 0.001
251 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4866 (3)0.35711 (12)0.69622 (11)0.0629 (5)
O20.4403 (4)0.38109 (15)0.56725 (12)0.0928 (9)
O30.2099 (3)0.66252 (15)0.46266 (11)0.0705 (6)
O40.1541 (4)0.77886 (16)0.54355 (13)0.0804 (7)
O50.6955 (2)0.40878 (11)1.21814 (9)0.0482 (4)
O60.6333 (2)0.58591 (11)1.26663 (9)0.0467 (4)
O70.5222 (3)0.71519 (11)1.16062 (10)0.0620 (5)
N10.4733 (3)0.49707 (14)0.80101 (11)0.0419 (4)
H1N10.520 (3)0.4462 (17)0.7932 (14)0.041 (7)*
N20.4873 (3)0.53900 (13)0.87742 (10)0.0436 (4)
N30.4436 (3)0.40829 (14)0.63849 (13)0.0516 (5)
N40.2094 (3)0.69931 (16)0.53100 (13)0.0535 (5)
C10.4052 (3)0.54403 (15)0.73618 (12)0.0374 (4)
C20.3933 (3)0.50496 (15)0.65539 (13)0.0391 (5)
C30.3317 (3)0.55573 (17)0.58869 (13)0.0428 (5)
H3A0.32790.52920.53620.051*
C40.2756 (3)0.64651 (16)0.60122 (14)0.0425 (5)
C50.2773 (3)0.68693 (16)0.67997 (14)0.0445 (5)
H5A0.23490.74740.68780.053*
C60.3416 (3)0.63669 (16)0.74534 (14)0.0434 (5)
H6A0.34380.66420.79750.052*
C70.5672 (3)0.48885 (17)0.93111 (13)0.0439 (5)
H7A0.61490.43170.91480.053*
C80.5867 (3)0.51809 (16)1.01780 (13)0.0422 (5)
C90.6408 (3)0.45032 (17)1.07387 (13)0.0419 (5)
H9A0.67170.39091.05540.050*
C100.6487 (3)0.47149 (16)1.15789 (13)0.0401 (5)
C110.6106 (3)0.56190 (16)1.18476 (13)0.0408 (5)
C120.5579 (3)0.63001 (15)1.12739 (14)0.0446 (5)
C130.5446 (4)0.60796 (16)1.04410 (13)0.0467 (6)
H13A0.50800.65291.00610.056*
C140.7279 (4)0.31452 (17)1.19216 (17)0.0543 (6)
H14A0.76770.27821.23860.081*
H14B0.81820.31401.14990.081*
H14C0.61930.28821.17060.081*
C150.4822 (4)0.5655 (2)1.31779 (15)0.0589 (7)
H15A0.50730.58401.37370.088*
H15B0.45810.49961.31620.088*
H15C0.37970.59911.29780.088*
C160.4671 (7)0.78726 (19)1.10517 (18)0.0905 (13)
H16A0.44940.84421.13550.136*
H16B0.35710.76951.07880.136*
H16C0.55780.79661.06390.136*
U11U22U33U12U13U23
O10.0928 (15)0.0415 (8)0.0545 (10)0.0056 (11)−0.0095 (11)−0.0040 (8)
O20.157 (3)0.0725 (13)0.0492 (11)0.0356 (16)−0.0179 (14)−0.0286 (10)
O30.0917 (15)0.0789 (13)0.0410 (10)−0.0034 (13)−0.0048 (10)0.0092 (9)
O40.1078 (19)0.0642 (13)0.0691 (13)0.0249 (14)0.0022 (13)0.0156 (10)
O50.0592 (11)0.0459 (9)0.0394 (8)0.0015 (8)−0.0075 (7)0.0025 (7)
O60.0545 (10)0.0552 (9)0.0304 (7)−0.0098 (8)−0.0006 (7)−0.0059 (7)
O70.1072 (16)0.0410 (8)0.0376 (8)0.0064 (11)0.0011 (10)−0.0034 (7)
N10.0522 (12)0.0412 (10)0.0322 (9)0.0014 (10)0.0006 (8)−0.0061 (7)
N20.0522 (12)0.0476 (10)0.0309 (8)−0.0034 (9)0.0013 (8)−0.0056 (7)
N30.0627 (14)0.0454 (10)0.0468 (11)0.0015 (11)−0.0025 (10)−0.0120 (9)
N40.0556 (13)0.0585 (13)0.0465 (12)−0.0041 (11)0.0039 (10)0.0121 (10)
C10.0364 (11)0.0419 (11)0.0338 (10)−0.0058 (9)0.0027 (8)−0.0034 (8)
C20.0432 (12)0.0397 (11)0.0345 (10)−0.0020 (10)0.0015 (9)−0.0079 (9)
C30.0442 (12)0.0530 (13)0.0313 (10)−0.0056 (11)0.0008 (9)−0.0057 (9)
C40.0409 (12)0.0473 (13)0.0393 (11)−0.0054 (10)0.0002 (9)0.0051 (9)
C50.0461 (12)0.0395 (12)0.0479 (12)−0.0003 (10)0.0027 (11)−0.0031 (10)
C60.0472 (13)0.0444 (12)0.0387 (11)−0.0001 (11)0.0033 (10)−0.0086 (9)
C70.0505 (14)0.0474 (12)0.0338 (10)−0.0023 (11)0.0026 (10)−0.0050 (9)
C80.0451 (13)0.0502 (13)0.0312 (10)−0.0030 (10)−0.0011 (9)−0.0019 (8)
C90.0438 (13)0.0434 (12)0.0384 (11)−0.0010 (10)−0.0004 (10)−0.0060 (9)
C100.0389 (12)0.0452 (12)0.0361 (10)−0.0036 (10)−0.0039 (9)0.0004 (8)
C110.0455 (12)0.0455 (12)0.0315 (10)−0.0065 (10)−0.0008 (9)−0.0027 (9)
C120.0573 (15)0.0409 (11)0.0356 (10)−0.0028 (11)0.0012 (10)−0.0036 (9)
C130.0617 (16)0.0462 (12)0.0321 (10)−0.0020 (12)0.0023 (10)0.0012 (8)
C140.0585 (15)0.0468 (14)0.0576 (15)0.0035 (12)−0.0082 (13)0.0014 (11)
C150.0664 (17)0.0673 (16)0.0429 (13)−0.0129 (15)0.0121 (13)−0.0077 (11)
C160.172 (4)0.0442 (14)0.0557 (16)0.019 (2)−0.002 (2)0.0042 (12)
O1—N31.229 (3)C5—C61.365 (3)
O2—N31.215 (3)C5—H5A0.9300
O3—N41.223 (3)C6—H6A0.9300
O4—N41.228 (3)C7—C81.469 (3)
O5—C101.369 (3)C7—H7A0.9300
O5—C141.433 (3)C8—C91.387 (3)
O6—C111.377 (2)C8—C131.391 (3)
O6—C151.430 (3)C9—C101.392 (3)
O7—C121.358 (3)C9—H9A0.9300
O7—C161.427 (3)C10—C111.394 (3)
N1—C11.344 (3)C11—C121.402 (3)
N1—N21.376 (2)C12—C131.386 (3)
N1—H1N10.82 (2)C13—H13A0.9300
N2—C71.274 (3)C14—H14A0.9600
N3—C21.459 (3)C14—H14B0.9600
N4—C41.450 (3)C14—H14C0.9600
C1—C61.416 (3)C15—H15A0.9600
C1—C21.423 (3)C15—H15B0.9600
C2—C31.379 (3)C15—H15C0.9600
C3—C41.380 (3)C16—H16A0.9600
C3—H3A0.9300C16—H16B0.9600
C4—C51.398 (3)C16—H16C0.9600
C10—O5—C14116.87 (18)C9—C8—C7116.9 (2)
C11—O6—C15114.02 (18)C13—C8—C7122.2 (2)
C12—O7—C16117.21 (18)C8—C9—C10119.8 (2)
C1—N1—N2120.63 (18)C8—C9—H9A120.1
C1—N1—H1N1119.1 (17)C10—C9—H9A120.1
N2—N1—H1N1119.6 (17)O5—C10—C9124.1 (2)
C7—N2—N1113.60 (19)O5—C10—C11116.05 (19)
O2—N3—O1122.2 (2)C9—C10—C11119.8 (2)
O2—N3—C2118.4 (2)O6—C11—C10120.4 (2)
O1—N3—C2119.38 (19)O6—C11—C12119.7 (2)
O3—N4—O4123.3 (2)C10—C11—C12119.80 (19)
O3—N4—C4118.7 (2)O7—C12—C13125.0 (2)
O4—N4—C4118.0 (2)O7—C12—C11114.71 (18)
N1—C1—C6120.90 (19)C13—C12—C11120.3 (2)
N1—C1—C2122.81 (19)C12—C13—C8119.4 (2)
C6—C1—C2116.3 (2)C12—C13—H13A120.3
C3—C2—C1122.1 (2)C8—C13—H13A120.3
C3—C2—N3116.06 (18)O5—C14—H14A109.5
C1—C2—N3121.9 (2)O5—C14—H14B109.5
C2—C3—C4118.87 (19)H14A—C14—H14B109.5
C2—C3—H3A120.6O5—C14—H14C109.5
C4—C3—H3A120.6H14A—C14—H14C109.5
C3—C4—C5121.4 (2)H14B—C14—H14C109.5
C3—C4—N4118.6 (2)O6—C15—H15A109.5
C5—C4—N4120.0 (2)O6—C15—H15B109.5
C6—C5—C4119.3 (2)H15A—C15—H15B109.5
C6—C5—H5A120.4O6—C15—H15C109.5
C4—C5—H5A120.4H15A—C15—H15C109.5
C5—C6—C1122.0 (2)H15B—C15—H15C109.5
C5—C6—H6A119.0O7—C16—H16A109.5
C1—C6—H6A119.0O7—C16—H16B109.5
N2—C7—C8122.3 (2)H16A—C16—H16B109.5
N2—C7—H7A118.8O7—C16—H16C109.5
C8—C7—H7A118.8H16A—C16—H16C109.5
C9—C8—C13120.9 (2)H16B—C16—H16C109.5
C1—N1—N2—C7−174.7 (2)N2—C7—C8—C9166.5 (2)
N2—N1—C1—C6−1.8 (3)N2—C7—C8—C13−10.3 (4)
N2—N1—C1—C2177.9 (2)C13—C8—C9—C101.8 (4)
N1—C1—C2—C3−176.6 (2)C7—C8—C9—C10−175.1 (2)
C6—C1—C2—C33.1 (3)C14—O5—C10—C9−3.7 (3)
N1—C1—C2—N34.2 (4)C14—O5—C10—C11177.5 (2)
C6—C1—C2—N3−176.1 (2)C8—C9—C10—O5178.1 (2)
O2—N3—C2—C35.1 (4)C8—C9—C10—C11−3.1 (4)
O1—N3—C2—C3−174.5 (2)C15—O6—C11—C10−86.0 (3)
O2—N3—C2—C1−175.7 (3)C15—O6—C11—C1297.3 (3)
O1—N3—C2—C14.7 (4)O5—C10—C11—O64.6 (3)
C1—C2—C3—C4−1.7 (4)C9—C10—C11—O6−174.2 (2)
N3—C2—C3—C4177.6 (2)O5—C10—C11—C12−178.6 (2)
C2—C3—C4—C5−1.2 (4)C9—C10—C11—C122.5 (4)
C2—C3—C4—N4−179.4 (2)C16—O7—C12—C13−0.1 (4)
O3—N4—C4—C3−1.9 (3)C16—O7—C12—C11−179.8 (3)
O4—N4—C4—C3177.5 (3)O6—C11—C12—O7−4.0 (3)
O3—N4—C4—C5179.8 (2)C10—C11—C12—O7179.2 (2)
O4—N4—C4—C5−0.8 (3)O6—C11—C12—C13176.3 (2)
C3—C4—C5—C62.4 (4)C10—C11—C12—C13−0.5 (4)
N4—C4—C5—C6−179.4 (2)O7—C12—C13—C8179.4 (2)
C4—C5—C6—C1−0.8 (4)C11—C12—C13—C8−0.9 (4)
N1—C1—C6—C5177.8 (2)C9—C8—C13—C120.3 (4)
C2—C1—C6—C5−1.8 (3)C7—C8—C13—C12177.0 (2)
N1—N2—C7—C8−176.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.82 (2)2.04 (2)2.624 (3)129 (2)
C16—H16C···O2i0.962.443.169 (4)133
C14—H14B···Cg1ii0.962.893.514 (3)123
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O10.82 (2)2.04 (2)2.624 (3)129 (2)
C16—H16C⋯O2i 0.962.443.169 (4)133
C14—H14BCg1ii 0.962.893.514 (3)123

Symmetry codes: (i) ; (ii) .

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6.  (E)-1-(2,4-Dinitro-phen-yl)-2-[1-(2-meth-oxy-phen-yl)ethyl-idene]hydrazine.

Authors:  Hoong-Kun Fun; Boonlerd Nilwanna; Patcharaporn Jansrisewangwong; Thawanrat Kobkeatthawin; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05

7.  (E)-1-(2,4-Dinitro-phen-yl)-2-[1-(3-meth-oxy-phen-yl)ethyl-idene]hydrazine.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; Boonlerd Nilwanna; Thawanrat Kobkeatthawin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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9.  1-(2,4-Di-nitro-phen-yl)-2-[(E)-2,4,5-tri-meth-oxy-benzyl-idene]hydrazine.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; Boonlerd Nilwanna; Thawanrat Kobkeatthawin; Nawong Boonnak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-06
  9 in total

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