Literature DB >> 24101471

CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts.

Shuxin Zhang1, Meng Xie, Guodong Ren, Bin Yu.   

Abstract

CDC5 is a MYB-related protein that exists in plants, animals, and fungi. In Arabidopsis, CDC5 regulates both growth and immunity through unknown mechanisms. Here, we show that CDC5 from Arabidopsis positively regulates the accumulation of microRNAs (miRNAs), which control many biological processes including development and adaptations to environments in plants. CDC5 interacts with both the promoters of genes encoding miRNAs (MIR) and the DNA-dependent RNA polymerase II. As a consequence, lack of CDC5 reduces the occupancy of polymerase II at MIR promoters, as well as MIR promoter activities. In addition, CDC5 is associated with the DICER-LIKE1 complex, which generates miRNAs from their primary transcripts and is required for efficient miRNA production. These results suggest that CDC5 may have dual roles in miRNA biogenesis: functioning as a positive transcription factor of MIR and/or acting as a component of the DICER-LIKE1 complex to enhance primary miRNA processing.

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Year:  2013        PMID: 24101471      PMCID: PMC3808604          DOI: 10.1073/pnas.1310644110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

Review 1.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

2.  Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis.

Authors:  Yoichiro Fujioka; Maki Utsumi; Yusuke Ohba; Yuichiro Watanabe
Journal:  Plant Cell Physiol       Date:  2007-08-03       Impact factor: 4.927

Review 3.  Origin, biogenesis, and activity of plant microRNAs.

Authors:  Olivier Voinnet
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin.

Authors:  C Lu; N Fedoroff
Journal:  Plant Cell       Date:  2000-12       Impact factor: 11.277

5.  A link between RNA metabolism and silencing affecting Arabidopsis development.

Authors:  Brian D Gregory; Ronan C O'Malley; Ryan Lister; Mark A Urich; Julian Tonti-Filippini; Huaming Chen; A Harvey Millar; Joseph R Ecker
Journal:  Dev Cell       Date:  2008-05-22       Impact factor: 12.270

6.  The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

Authors:  Zhicheng Dong; Meng-Hsuan Han; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

7.  The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis.

Authors:  Bin Yu; Liu Bi; Binglian Zheng; Lijuan Ji; David Chevalier; Manu Agarwal; Vanitharani Ramachandran; Wanxiang Li; Thierry Lagrange; John C Walker; Xuemei Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-15       Impact factor: 11.205

8.  Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.

Authors:  Sascha Laubinger; Timo Sachsenberg; Georg Zeller; Wolfgang Busch; Jan U Lohmann; Gunnar Rätsch; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-12       Impact factor: 11.205

9.  Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems.

Authors:  S E Jacobsen; M P Running; E M Meyerowitz
Journal:  Development       Date:  1999-12       Impact factor: 6.868

10.  CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.

Authors:  Wonkeun Park; Junjie Li; Rentao Song; Joachim Messing; Xuemei Chen
Journal:  Curr Biol       Date:  2002-09-03       Impact factor: 10.834

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  52 in total

1.  DSP1 and DSP4 Act Synergistically in Small Nuclear RNA 3' End Maturation and Pollen Growth.

Authors:  Xuepiao Pu; Chunmei Meng; Weili Wang; Siyu Yang; Yuan Chen; Qingjun Xie; Bin Yu; Yunfeng Liu
Journal:  Plant Physiol       Date:  2019-06-21       Impact factor: 8.340

Review 2.  Regulation of pri-MIRNA processing: mechanistic insights into the miRNA homeostasis in plant.

Authors:  Jayanti Jodder
Journal:  Plant Cell Rep       Date:  2021-01-16       Impact factor: 4.570

3.  The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing.

Authors:  Tianran Jia; Bailong Zhang; Chenjiang You; Yong Zhang; Liping Zeng; Shengjun Li; Kaeli C M Johnson; Bin Yu; Xin Li; Xuemei Chen
Journal:  Plant Cell       Date:  2017-09-25       Impact factor: 11.277

4.  MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities.

Authors:  Shengjun Li; Mu Li; Kan Liu; Huimin Zhang; Shuxin Zhang; Chi Zhang; Bin Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-04       Impact factor: 11.205

5.  MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.

Authors:  Shengjun Li; Kan Liu; Bangjun Zhou; Mu Li; Shuxin Zhang; Lirong Zeng; Chi Zhang; Bin Yu
Journal:  Plant Cell       Date:  2018-02-05       Impact factor: 11.277

6.  DAWDLE Interacts with DICER-LIKE Proteins to Mediate Small RNA Biogenesis.

Authors:  Shuxin Zhang; Yongchao Dou; Shengjun Li; Guodong Ren; David Chevalier; Chi Zhang; Bin Yu
Journal:  Plant Physiol       Date:  2018-05-21       Impact factor: 8.340

Review 7.  The 'how' and 'where' of plant microRNAs.

Authors:  Yu Yu; Tianran Jia; Xuemei Chen
Journal:  New Phytol       Date:  2017-10-19       Impact factor: 10.151

8.  DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways.

Authors:  Heqiang Huo; Shouhui Wei; Kent J Bradford
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

9.  Identification of cell-specific targets of sumoylation during mouse spermatogenesis.

Authors:  Yuxuan Xiao; Daniel Pollack; Miriam Andrusier; Avi Levy; Myrasol Callaway; Edward Nieves; Prabhakara Reddi; Margarita Vigodner
Journal:  Reproduction       Date:  2016-02       Impact factor: 3.906

Review 10.  microRNA biogenesis, degradation and activity in plants.

Authors:  Meng Xie; Shuxin Zhang; Bin Yu
Journal:  Cell Mol Life Sci       Date:  2014-09-11       Impact factor: 9.261

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