Literature DB >> 18632581

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis.

Bin Yu1, Liu Bi, Binglian Zheng, Lijuan Ji, David Chevalier, Manu Agarwal, Vanitharani Ramachandran, Wanxiang Li, Thierry Lagrange, John C Walker, Xuemei Chen.   

Abstract

Proteins containing the forkhead-associated domain (FHA) are known to act in biological processes such as DNA damage repair, protein degradation, and signal transduction. Here we report that DAWDLE (DDL), an FHA domain-containing protein in Arabidopsis, acts in the biogenesis of miRNAs and endogenous siRNAs. Unlike mutants of genes known to participate in the processing of miRNA precursors, such as dcl1, hyponastic leaves1, and serrate, ddl mutants show reduced levels of pri-miRNAs as well as mature miRNAs. Promoter activity of MIR genes, however, is not affected by ddl mutations. DDL is an RNA binding protein and is able to interact with DCL1. In addition, we found that SNIP1, the human homolog of DDL, is involved in miRNA biogenesis and interacts with Drosha. Therefore, we uncovered an evolutionarily conserved factor in miRNA biogenesis. We propose that DDL participates in miRNA biogenesis by facilitating DCL1 to access or recognize pri-miRNAs.

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Year:  2008        PMID: 18632581      PMCID: PMC2481372          DOI: 10.1073/pnas.0804218105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

2.  SERRATE: a new player on the plant microRNA scene.

Authors:  Dajana Lobbes; Ghanasyam Rallapalli; Dominik D Schmidt; Cathie Martin; Jonathan Clarke
Journal:  EMBO Rep       Date:  2006-09-15       Impact factor: 8.807

3.  Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body.

Authors:  Liang Song; Meng-Hsuan Han; Joanna Lesicka; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

4.  SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.

Authors:  Li Yang; Ziqiang Liu; Feng Lu; Aiwu Dong; Hai Huang
Journal:  Plant J       Date:  2006-08-02       Impact factor: 6.417

5.  A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.

Authors:  Ramya Rajagopalan; Hervé Vaucheret; Jerry Trejo; David P Bartel
Journal:  Genes Dev       Date:  2006-12-15       Impact factor: 11.361

6.  DAWDLE, a forkhead-associated domain gene, regulates multiple aspects of plant development.

Authors:  Erin R Morris; David Chevalier; John C Walker
Journal:  Plant Physiol       Date:  2006-05-05       Impact factor: 8.340

7.  SNIP1 is a candidate modifier of the transcriptional activity of c-Myc on E box-dependent target genes.

Authors:  Makiko Fujii; Lyudmila A Lyakh; Cameron P Bracken; Junya Fukuoka; Morisada Hayakawa; Tadasuke Tsukiyama; Steven J Soll; Melissa Harris; Sonia Rocha; Kevin C Roche; Shin-Ichi Tominaga; Jin Jen; Neil D Perkins; Robert J Lechleider; Anita B Roberts
Journal:  Mol Cell       Date:  2006-12-08       Impact factor: 17.970

8.  Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays.

Authors:  Sorina C Popescu; George V Popescu; Shawn Bachan; Zimei Zhang; Montrell Seay; Mark Gerstein; Michael Snyder; S P Dinesh-Kumar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-23       Impact factor: 11.205

9.  Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants.

Authors:  Yuda Fang; David L Spector
Journal:  Curr Biol       Date:  2007-04-19       Impact factor: 10.834

10.  MicroRNA control of Nodal signalling.

Authors:  Graziano Martello; Luca Zacchigna; Masafumi Inui; Marco Montagner; Maddalena Adorno; Anant Mamidi; Leonardo Morsut; Sandra Soligo; Uyen Tran; Sirio Dupont; Michelangelo Cordenonsi; Oliver Wessely; Stefano Piccolo
Journal:  Nature       Date:  2007-08-29       Impact factor: 49.962

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  129 in total

Review 1.  Dicing bodies.

Authors:  Qi Liu; Leilei Shi; Yuda Fang
Journal:  Plant Physiol       Date:  2011-10-24       Impact factor: 8.340

Review 2.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

Review 3.  Emerging paradigms of regulated microRNA processing.

Authors:  Martin A Newman; Scott M Hammond
Journal:  Genes Dev       Date:  2010-06-01       Impact factor: 11.361

Review 4.  Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata.

Authors:  Tae Kyung Hyun; Mohammad Nazim Uddin; Yeonggil Rim; Jae-Yean Kim
Journal:  Protoplasma       Date:  2010-11-02       Impact factor: 3.356

Review 5.  Smad-mediated regulation of microRNA biosynthesis.

Authors:  Matthew T Blahna; Akiko Hata
Journal:  FEBS Lett       Date:  2012-01-28       Impact factor: 4.124

Review 6.  Regulation of senescence by microRNA biogenesis factors.

Authors:  Kotb Abdelmohsen; Subramanya Srikantan; Min-Ju Kang; Myriam Gorospe
Journal:  Ageing Res Rev       Date:  2012-01-28       Impact factor: 10.895

Review 7.  Signaling-mediated regulation of MicroRNA processing.

Authors:  Jia Shen; Mien-Chie Hung
Journal:  Cancer Res       Date:  2015-02-06       Impact factor: 12.701

8.  Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.

Authors:  Sascha Laubinger; Georg Zeller; Stefan R Henz; Sabine Buechel; Timo Sachsenberg; Jia-Wei Wang; Gunnar Rätsch; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-24       Impact factor: 11.205

Review 9.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

10.  NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.

Authors:  Lulu Wang; Xianwei Song; Lianfeng Gu; Xin Li; Shouyun Cao; Chengcai Chu; Xia Cui; Xuemei Chen; Xiaofeng Cao
Journal:  Plant Cell       Date:  2013-02-19       Impact factor: 11.277

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