Literature DB >> 25209320

microRNA biogenesis, degradation and activity in plants.

Meng Xie1, Shuxin Zhang, Bin Yu.   

Abstract

microRNAs (miRNAs) are important regulators of gene expression. After excised from primary miRNA transcript by dicer-like1 (DCL1, an RNAse III enzyme), miRNAs bind and guide their effector protein named argonaute 1 (AGO1) to silence the expression of target RNAs containing their complementary sequences in plants. miRNA levels and activities are tightly controlled to ensure their functions in various biological processes such as development, metabolism and responses to abiotic and biotic stresses. Studies have identified many factors that involve in miRNA accumulation and activities. Characterization of these factors in turn greatly improves our understanding of the processes related to miRNAs. Here, we review recent progress of mechanisms underlying miRNA expression and functions in plants.

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Year:  2014        PMID: 25209320     DOI: 10.1007/s00018-014-1728-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  162 in total

1.  Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.

Authors:  Sascha Laubinger; Georg Zeller; Stefan R Henz; Sabine Buechel; Timo Sachsenberg; Jia-Wei Wang; Gunnar Rätsch; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-24       Impact factor: 11.205

2.  Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2.

Authors:  Levi Yant; Johannes Mathieu; Thanh Theresa Dinh; Felix Ott; Christa Lanz; Heike Wollmann; Xuemei Chen; Markus Schmid
Journal:  Plant Cell       Date:  2010-07-30       Impact factor: 11.277

3.  Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis.

Authors:  Guodong Ren; Meng Xie; Yongchao Dou; Shuxin Zhang; Chi Zhang; Bin Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

4.  Crystal structure of Arabidopsis thaliana Dawdle forkhead-associated domain reveals a conserved phospho-threonine recognition cleft for dicer-like 1 binding.

Authors:  Satoru Machida; Y Adam Yuan
Journal:  Mol Plant       Date:  2013-01-11       Impact factor: 13.164

5.  The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.

Authors:  Andrew L Eamens; Neil A Smith; Shaun J Curtin; Ming-Bo Wang; Peter M Waterhouse
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

6.  The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

Authors:  Zhicheng Dong; Meng-Hsuan Han; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

7.  Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants.

Authors:  Yuda Fang; David L Spector
Journal:  Curr Biol       Date:  2007-04-19       Impact factor: 10.834

8.  RACK1 scaffold proteins influence miRNA abundance in Arabidopsis.

Authors:  Corinna Speth; Eva-Maria Willing; Stephanie Rausch; Korbinian Schneeberger; Sascha Laubinger
Journal:  Plant J       Date:  2013-10-05       Impact factor: 6.417

9.  Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE.

Authors:  Satoru Machida; Hong-Ying Chen; Y Adam Yuan
Journal:  Nucleic Acids Res       Date:  2011-06-17       Impact factor: 16.971

10.  SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex.

Authors:  Marie-Noëlle Pouch-Pélissier; Thierry Pélissier; Taline Elmayan; Hervé Vaucheret; Drasko Boko; Michael F Jantsch; Jean-Marc Deragon
Journal:  PLoS Genet       Date:  2008-06-13       Impact factor: 5.917

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  45 in total

1.  Discovery and characterization of the first non-coding RNA that regulates gene expression, micF RNA: A historical perspective.

Authors:  Nicholas Delihas
Journal:  World J Biol Chem       Date:  2015-11-26

2.  Identification of drought-responsive microRNAs in tomato using high-throughput sequencing.

Authors:  Minmin Liu; Huiyang Yu; Gangjun Zhao; Qiufeng Huang; Yongen Lu; Bo Ouyang
Journal:  Funct Integr Genomics       Date:  2017-09-28       Impact factor: 3.410

Review 3.  Genetic Engineering for Disease Resistance in Plants: Recent Progress and Future Perspectives.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Plant Physiol       Date:  2019-03-13       Impact factor: 8.340

Review 4.  Regulation of pri-MIRNA processing: mechanistic insights into the miRNA homeostasis in plant.

Authors:  Jayanti Jodder
Journal:  Plant Cell Rep       Date:  2021-01-16       Impact factor: 4.570

5.  RNA-binding protein DUS16 plays an essential role in primary miRNA processing in the unicellular alga Chlamydomonas reinhardtii.

Authors:  Tomohito Yamasaki; Masayuki Onishi; Eun-Jeong Kim; Heriberto Cerutti; Takeshi Ohama
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-31       Impact factor: 11.205

Review 6.  Long non-coding RNAs: Fine-tuning the developmental responses in plants.

Authors:  Riddhi Datta; Soumitra Paul
Journal:  J Biosci       Date:  2019-09       Impact factor: 1.826

7.  Highly preserved roles of Brassica MIR172 in polyploid Brassicas: ectopic expression of variants of Brassica MIR172 accelerates floral transition.

Authors:  S M Shivaraj; Aditi Jain; Anandita Singh
Journal:  Mol Genet Genomics       Date:  2018-05-11       Impact factor: 3.291

8.  miR-185 mediates lung epithelial cell death after oxidative stress.

Authors:  Duo Zhang; Heedoo Lee; Yong Cao; Charles S Dela Cruz; Yang Jin
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2016-01-08       Impact factor: 5.464

9.  Association genetics in Populus reveals the interactions between Pto-miR160a and its target Pto-ARF16.

Authors:  Jiaxing Tian; Jinhui Chen; Bailian Li; Deqiang Zhang
Journal:  Mol Genet Genomics       Date:  2016-01-05       Impact factor: 3.291

10.  DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways.

Authors:  Heqiang Huo; Shouhui Wei; Kent J Bradford
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

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