Literature DB >> 29317499

The oligomerization state of bacterial enzyme I (EI) determines EI's allosteric stimulation or competitive inhibition by α-ketoglutarate.

Trang T Nguyen1, Rodolfo Ghirlando2, Vincenzo Venditti3,4.   

Abstract

The bacterial phosphotransferase system (PTS) is a signal transduction pathway that couples phosphoryl transfer to active sugar transport across the cell membrane. The PTS is initiated by phosphorylation of enzyme I (EI) by phosphoenolpyruvate (PEP). The EI phosphorylation state determines the phosphorylation states of all other PTS components and is thought to play a central role in the regulation of several metabolic pathways and to control the biology of bacterial cells at multiple levels, for example, affecting virulence and biofilm formation. Given the pivotal role of EI in bacterial metabolism, an improved understanding of the mechanisms controlling its activity could inform future strategies for bioengineering and antimicrobial design. Here, we report an enzymatic assay, based on Selective Optimized Flip Angle Short Transient (SOFAST) NMR experiments, to investigate the effect of the small-molecule metabolite α-ketoglutarate (αKG) on the kinetics of the EI-catalyzed phosphoryl transfer reaction. We show that at experimental conditions favoring the monomeric form of EI, αKG promotes dimerization and acts as an allosteric stimulator of the enzyme. However, when the oligomerization state of EI is shifted toward the dimeric species, αKG functions as a competitive inhibitor of EI. We developed a kinetic model that fully accounted for the experimental data and indicated that bacterial cells might use the observed interplay between allosteric stimulation and competitive inhibition of EI by αKG to respond to physiological fluctuations in the intracellular environment. We expect that the mechanism for regulating EI activity revealed here is common to several other oligomeric enzymes.

Entities:  

Keywords:  SOFAST-TROSY; allosteric regulation; enzyme stimulation; inhibition mechanism; nuclear magnetic resonance (NMR); protein assembly; protein oligomerization; signaling

Mesh:

Substances:

Year:  2018        PMID: 29317499      PMCID: PMC5818175          DOI: 10.1074/jbc.RA117.001466

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  33 in total

Review 1.  Cellular concentrations of enzymes and their substrates.

Authors:  K R Albe; M H Butler; B E Wright
Journal:  J Theor Biol       Date:  1990-03-22       Impact factor: 2.691

2.  Inducer exclusion in Escherichia coli by non-PTS substrates: the role of the PEP to pyruvate ratio in determining the phosphorylation state of enzyme IIAGlc.

Authors:  B M Hogema; J C Arents; R Bader; K Eijkemans; H Yoshida; H Takahashi; H Aiba; P W Postma
Journal:  Mol Microbiol       Date:  1998-11       Impact factor: 3.501

Review 3.  The bacterial phosphoenolpyruvate:carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions.

Authors:  Josef Deutscher; Francine Moussan Désirée Aké; Meriem Derkaoui; Arthur Constant Zébré; Thanh Nguyen Cao; Houda Bouraoui; Takfarinas Kentache; Abdelhamid Mokhtari; Eliane Milohanic; Philippe Joyet
Journal:  Microbiol Mol Biol Rev       Date:  2014-06       Impact factor: 11.056

Review 4.  Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system.

Authors:  G Marius Clore; Vincenzo Venditti
Journal:  Trends Biochem Sci       Date:  2013-09-19       Impact factor: 13.807

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 6.  Phosphorylation and dephosphorylation of histidine residues in proteins.

Authors:  Susanne Klumpp; Josef Krieglstein
Journal:  Eur J Biochem       Date:  2002-02

7.  Improving the thermal, radial, and temporal accuracy of the analytical ultracentrifuge through external references.

Authors:  Rodolfo Ghirlando; Andrea Balbo; Grzegorz Piszczek; Patrick H Brown; Marc S Lewis; Chad A Brautigam; Peter Schuck; Huaying Zhao
Journal:  Anal Biochem       Date:  2013-05-24       Impact factor: 3.365

8.  Impact of phosphorylation on structure and thermodynamics of the interaction between the N-terminal domain of enzyme I and the histidine phosphocarrier protein of the bacterial phosphotransferase system.

Authors:  Jeong-Yong Suh; Mengli Cai; G Marius Clore
Journal:  J Biol Chem       Date:  2008-04-29       Impact factor: 5.157

9.  Structural basis for enzyme I inhibition by α-ketoglutarate.

Authors:  Vincenzo Venditti; Rodolfo Ghirlando; G Marius Clore
Journal:  ACS Chem Biol       Date:  2013-03-29       Impact factor: 5.100

10.  Reciprocal regulation of the autophosphorylation of enzyme INtr by glutamine and α-ketoglutarate in Escherichia coli.

Authors:  Chang-Ro Lee; Young-Ha Park; Miri Kim; Yeon-Ran Kim; Soyoung Park; Alan Peterkofsky; Yeong-Jae Seok
Journal:  Mol Microbiol       Date:  2013-03-21       Impact factor: 3.501

View more
  5 in total

1.  Hybrid Thermophilic/Mesophilic Enzymes Reveal a Role for Conformational Disorder in Regulation of Bacterial Enzyme I.

Authors:  Rochelle R Dotas; Trang T Nguyen; Charles E Stewart; Rodolfo Ghirlando; Davit A Potoyan; Vincenzo Venditti
Journal:  J Mol Biol       Date:  2020-06-03       Impact factor: 5.469

2.  N-terminal fusion of the N-terminal domain of bacterial enzyme I facilitates recombinant expression and purification of the human RNA demethylases FTO and Alkbh5.

Authors:  Balabhadra Khatiwada; Jeffrey A Purslow; Eric S Underbakke; Vincenzo Venditti
Journal:  Protein Expr Purif       Date:  2019-11-15       Impact factor: 1.650

3.  Structure elucidation of the elusive Enzyme I monomer reveals the molecular mechanisms linking oligomerization and enzymatic activity.

Authors:  Trang T Nguyen; Rodolfo Ghirlando; Julien Roche; Vincenzo Venditti
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-18       Impact factor: 11.205

4.  Allosteric pluripotency as revealed by protein kinase A.

Authors:  J A Byun; M Akimoto; B VanSchouwen; T S Lazarou; S S Taylor; G Melacini
Journal:  Sci Adv       Date:  2020-06-19       Impact factor: 14.136

5.  A Single Point Mutation Controls the Rate of Interconversion Between the g + and g - Rotamers of the Histidine 189 χ2 Angle That Activates Bacterial Enzyme I for Catalysis.

Authors:  Jeffrey A Purslow; Jolene N Thimmesch; Valeria Sivo; Trang T Nguyen; Balabhadra Khatiwada; Rochelle R Dotas; Vincenzo Venditti
Journal:  Front Mol Biosci       Date:  2021-07-08
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.