Literature DB >> 15525128

Enhancement of association rates by nonspecific binding to DNA and cell membranes.

Huan-Xiang Zhou1, Attila Szabo.   

Abstract

A comprehensive analytic theory is developed for the kinetics of reversible association with specific sites on DNA and receptors on cell membranes in the presence of nonspecific binding to the target surfaces. Nonspecific binding is treated as a short-range attractive potential, which is more fundamental and realistic than the surface sliding model. The presence of a surface potential around the target enhances the rate of specific association and for reversible reactions leads to deviations from single exponential relaxation.

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Year:  2004        PMID: 15525128     DOI: 10.1103/PhysRevLett.93.178101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  31 in total

1.  Impact of protein/protein interactions on global intermolecular translocation rates of the transcription factors Sox2 and Oct1 between DNA cognate sites analyzed by z-exchange NMR spectroscopy.

Authors:  Yuki Takayama; G Marius Clore
Journal:  J Biol Chem       Date:  2012-06-20       Impact factor: 5.157

2.  Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker.

Authors:  Dana Vuzman; Michal Polonsky; Yaakov Levy
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

3.  Crowding effects on association reactions at membranes.

Authors:  Jun Soo Kim; Arun Yethiraj
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

4.  A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles.

Authors:  Huan-Xiang Zhou
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

Review 5.  Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement.

Authors:  G Marius Clore; Chun Tang; Junji Iwahara
Journal:  Curr Opin Struct Biol       Date:  2007-10-29       Impact factor: 6.809

6.  Electrostatic rate enhancement and transient complex of protein-protein association.

Authors:  Ramzi Alsallaq; Huan-Xiang Zhou
Journal:  Proteins       Date:  2008-04

7.  Solid-state NMR and MD simulations of the antiviral drug amantadine solubilized in DMPC bilayers.

Authors:  Conggang Li; Myunggi Yi; Jun Hu; Huan-Xiang Zhou; Timothy A Cross
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

8.  Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2007-12-22       Impact factor: 2.991

9.  Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements.

Authors:  Nicolas L Fawzi; Michaeleen Doucleff; Jeong-Yong Suh; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-07       Impact factor: 11.205

10.  Reversible Stochastically Gated Diffusion-Influenced Reactions.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Phys Chem B       Date:  2016-03-22       Impact factor: 2.991

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