Literature DB >> 24046642

rac-(E,E)-N,N'-Bis(2-chloro-benzyl-idene)cyclo-hexane-1,2-di-amine.

Ismail Warad1, Mousa Al-Noaimi, Salim F Haddad, Yasmin Al-Demeri, Belkheir Hammouti.   

Abstract

In the title racemic Schiff base ligand, C20H20Cl2N2, which was prepared by the condensation of 2-chloro-benzaldehyde and cyclo-hexane-1,2-di-amine, the cyclo-hexane ring adopts a chair conformation and the dihedral angle between the aromatic rings of the 2-chloro-phenyl substituent groups is 62.52 (8)°. In the structure, there are two short intra-molecular methine C-H⋯Cl inter-actions [C⋯Cl = 3.066 (2) and 3.076 (3) Å], and in the crystal there are also weak inter-molecular aromatic C-H⋯Cl [3.464 (3), 3.553 (3) and 3.600 (3) Å] and Cl⋯Cl [3.557 (3) and 3.891 (3) Å] contacts.

Entities:  

Year:  2013        PMID: 24046642      PMCID: PMC3770357          DOI: 10.1107/S1600536813014554

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of some Schiff bases derived from cyclo­hexane-1,2-di­amine, see: Arvinnezhad et al. (2012 ▶); Fan et al. (2011 ▶); Saleh Salga et al. (2010 ▶). For applications of chiral Schiff base ligands, see: Da Silva et al. (2011 ▶); Dhar & Taploo (1982 ▶); Przybylski et al. (2009 ▶); Gupta & Sutar (2008 ▶). For the synthesis of the title compound, see: Larrow & Jacobsen (1998 ▶).

Experimental

Crystal data

C20H20Cl2N2 M = 359.28 Monoclinic, a = 5.9029 (5) Å b = 19.5613 (13) Å c = 16.1662 (11) Å β = 93.493 (7)° V = 1863.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 293 K 0.30 × 0.20 × 0.15 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.902, T max = 0.949 7483 measured reflections 3273 independent reflections 2252 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.106 S = 1.02 3273 reflections 217 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813014554/zs2261sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813014554/zs2261Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813014554/zs2261Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H20Cl2N2F(000) = 752
Mr = 359.28Dx = 1.281 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2442 reflections
a = 5.9029 (5) Åθ = 3.1–29.1°
b = 19.5613 (13) ŵ = 0.35 mm1
c = 16.1662 (11) ÅT = 293 K
β = 93.493 (7)°Block, colourless
V = 1863.2 (2) Å30.30 × 0.20 × 0.15 mm
Z = 4
Agilent Xcalibur Eos diffractometer3273 independent reflections
Radiation source: Enhance (Mo) X-ray Source2252 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 16.0534 pixels mm-1θmax = 25.0°, θmin = 3.3°
ω scansh = −7→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −23→18
Tmin = 0.902, Tmax = 0.949l = −19→17
7483 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0349P)2 + 0.4202P] where P = (Fo2 + 2Fc2)/3
3273 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.73684 (13)0.05324 (3)0.02770 (4)0.0762 (2)
Cl21.12436 (13)0.46542 (4)0.17646 (5)0.0914 (3)
N10.7836 (3)0.26396 (10)−0.03727 (11)0.0555 (5)
C80.9564 (4)0.17516 (12)0.04725 (12)0.0489 (6)
C10.5739 (4)0.29405 (11)−0.07382 (12)0.0520 (6)
H1B0.44420.2674−0.05670.062*
C60.5559 (4)0.36693 (12)−0.04157 (13)0.0583 (7)
H6A0.68850.3932−0.05680.070*
N20.5510 (4)0.36480 (10)0.04896 (11)0.0613 (6)
C140.7170 (5)0.39062 (12)0.09007 (14)0.0586 (6)
H14A0.83180.41100.06170.070*
C70.7660 (4)0.20790 (12)−0.00033 (12)0.0492 (6)
H7A0.62580.1861−0.00320.059*
C131.1395 (4)0.21396 (13)0.07903 (13)0.0587 (6)
H13A1.14650.26020.06610.070*
C150.7373 (4)0.38992 (12)0.18143 (14)0.0550 (6)
C101.1237 (5)0.07662 (14)0.11857 (14)0.0673 (8)
H10A1.11790.03040.13170.081*
C90.9546 (4)0.10611 (12)0.06799 (12)0.0540 (6)
C160.9153 (4)0.42153 (12)0.22641 (15)0.0615 (7)
C200.5769 (5)0.35715 (13)0.22604 (15)0.0669 (7)
H20A0.45460.33590.19760.080*
C111.3010 (5)0.11644 (17)0.14930 (15)0.0777 (9)
H11A1.41560.09720.18380.093*
C170.9323 (5)0.42009 (15)0.31214 (17)0.0756 (8)
H17A1.05350.44150.34110.091*
C20.5740 (4)0.29389 (13)−0.16818 (13)0.0634 (7)
H2B0.70730.3178−0.18530.076*
H2C0.58040.2472−0.18800.076*
C30.3615 (5)0.32848 (13)−0.20597 (14)0.0679 (7)
H3A0.36790.3298−0.26580.081*
H3B0.22920.3020−0.19310.081*
C50.3413 (5)0.40078 (14)−0.07892 (15)0.0783 (9)
H5A0.33400.4476−0.05940.094*
H5B0.20930.3766−0.06100.094*
C121.3100 (4)0.18501 (17)0.12915 (15)0.0725 (8)
H12A1.43150.21160.14950.087*
C190.5930 (5)0.35511 (14)0.31149 (17)0.0783 (8)
H19A0.48410.33220.34010.094*
C40.3382 (5)0.40022 (14)−0.17353 (16)0.0825 (9)
H4A0.19700.4199−0.19620.099*
H4B0.46200.4281−0.19150.099*
C180.7716 (6)0.38728 (15)0.35396 (17)0.0819 (9)
H18A0.78250.38660.41160.098*
U11U22U33U12U13U23
Cl10.0871 (5)0.0566 (4)0.0835 (5)0.0021 (4)−0.0058 (4)0.0000 (3)
Cl20.0686 (5)0.1026 (6)0.1027 (6)−0.0136 (4)0.0018 (4)−0.0098 (4)
N10.0581 (13)0.0600 (13)0.0482 (11)0.0065 (10)0.0025 (10)0.0112 (9)
C80.0547 (15)0.0576 (15)0.0350 (11)0.0102 (12)0.0076 (10)−0.0003 (10)
C10.0560 (15)0.0538 (14)0.0457 (12)0.0028 (12)0.0003 (11)0.0077 (10)
C60.0690 (17)0.0549 (15)0.0499 (13)0.0001 (13)−0.0050 (12)0.0039 (11)
N20.0686 (14)0.0649 (13)0.0497 (11)0.0024 (11)−0.0019 (10)−0.0047 (9)
C140.0677 (17)0.0493 (14)0.0583 (15)0.0044 (13)0.0002 (13)−0.0018 (11)
C70.0542 (14)0.0543 (14)0.0393 (11)0.0055 (12)0.0034 (10)−0.0002 (11)
C130.0649 (17)0.0636 (16)0.0478 (13)0.0032 (13)0.0052 (12)−0.0007 (11)
C150.0638 (16)0.0454 (14)0.0547 (14)0.0065 (12)−0.0065 (13)−0.0056 (11)
C100.087 (2)0.0641 (17)0.0496 (14)0.0270 (16)−0.0021 (14)−0.0012 (12)
C90.0653 (16)0.0589 (15)0.0376 (12)0.0145 (13)0.0024 (11)−0.0025 (10)
C160.0647 (17)0.0533 (15)0.0656 (16)0.0062 (13)−0.0041 (13)−0.0067 (12)
C200.0782 (19)0.0636 (17)0.0576 (16)−0.0079 (15)−0.0060 (14)−0.0053 (12)
C110.081 (2)0.097 (2)0.0536 (15)0.0358 (18)−0.0137 (15)−0.0084 (15)
C170.081 (2)0.076 (2)0.0680 (18)0.0003 (17)−0.0157 (16)−0.0181 (15)
C20.0752 (18)0.0686 (17)0.0461 (13)0.0056 (14)0.0021 (13)0.0066 (12)
C30.0817 (19)0.0721 (18)0.0481 (14)0.0024 (15)−0.0103 (13)0.0079 (12)
C50.096 (2)0.0648 (17)0.0712 (18)0.0260 (16)−0.0146 (16)−0.0042 (14)
C120.0621 (17)0.098 (2)0.0570 (16)0.0101 (17)−0.0040 (14)−0.0143 (15)
C190.095 (2)0.0727 (19)0.0674 (18)−0.0071 (17)0.0074 (16)0.0016 (14)
C40.100 (2)0.0716 (19)0.0717 (18)0.0166 (17)−0.0243 (17)0.0146 (14)
C180.111 (3)0.077 (2)0.0552 (16)0.0005 (19)−0.0075 (18)−0.0097 (14)
Cl1—C91.745 (2)C10—H10A0.9300
Cl2—C161.742 (3)C16—C171.384 (3)
N1—C71.256 (3)C20—C191.379 (3)
N1—C11.462 (3)C20—H20A0.9300
C8—C91.392 (3)C11—C121.382 (4)
C8—C131.393 (3)C11—H11A0.9300
C8—C71.469 (3)C17—C181.359 (4)
C1—C61.524 (3)C17—H17A0.9300
C1—C21.525 (3)C2—C31.520 (3)
C1—H1B0.9800C2—H2B0.9700
C6—N21.466 (3)C2—H2C0.9700
C6—C51.522 (3)C3—C41.507 (4)
C6—H6A0.9800C3—H3A0.9700
N2—C141.256 (3)C3—H3B0.9700
C14—C151.475 (3)C5—C41.529 (3)
C14—H14A0.9300C5—H5A0.9700
C7—H7A0.9300C5—H5B0.9700
C13—C121.375 (3)C12—H12A0.9300
C13—H13A0.9300C19—C181.375 (4)
C15—C201.383 (3)C19—H19A0.9300
C15—C161.386 (3)C4—H4A0.9700
C10—C111.373 (4)C4—H4B0.9700
C10—C91.378 (3)C18—H18A0.9300
C7—N1—C1116.8 (2)C15—C20—H20A119.1
C9—C8—C13117.2 (2)C10—C11—C12120.3 (2)
C9—C8—C7122.2 (2)C10—C11—H11A119.9
C13—C8—C7120.5 (2)C12—C11—H11A119.9
N1—C1—C6108.26 (18)C18—C17—C16119.8 (3)
N1—C1—C2110.58 (19)C18—C17—H17A120.1
C6—C1—C2110.38 (18)C16—C17—H17A120.1
N1—C1—H1B109.2C3—C2—C1110.5 (2)
C6—C1—H1B109.2C3—C2—H2B109.5
C2—C1—H1B109.2C1—C2—H2B109.5
N2—C6—C5110.0 (2)C3—C2—H2C109.5
N2—C6—C1108.72 (18)C1—C2—H2C109.5
C5—C6—C1110.19 (19)H2B—C2—H2C108.1
N2—C6—H6A109.3C4—C3—C2111.4 (2)
C5—C6—H6A109.3C4—C3—H3A109.3
C1—C6—H6A109.3C2—C3—H3A109.3
C14—N2—C6117.0 (2)C4—C3—H3B109.3
N2—C14—C15122.6 (3)C2—C3—H3B109.3
N2—C14—H14A118.7H3A—C3—H3B108.0
C15—C14—H14A118.7C6—C5—C4110.7 (2)
N1—C7—C8123.1 (2)C6—C5—H5A109.5
N1—C7—H7A118.4C4—C5—H5A109.5
C8—C7—H7A118.4C6—C5—H5B109.5
C12—C13—C8121.1 (3)C4—C5—H5B109.5
C12—C13—H13A119.5H5A—C5—H5B108.1
C8—C13—H13A119.5C13—C12—C11120.1 (3)
C20—C15—C16117.0 (2)C13—C12—H12A119.9
C20—C15—C14120.7 (2)C11—C12—H12A119.9
C16—C15—C14122.3 (3)C18—C19—C20119.4 (3)
C11—C10—C9119.1 (3)C18—C19—H19A120.3
C11—C10—H10A120.5C20—C19—H19A120.3
C9—C10—H10A120.5C3—C4—C5111.0 (2)
C10—C9—C8122.2 (2)C3—C4—H4A109.4
C10—C9—Cl1117.6 (2)C5—C4—H4A109.4
C8—C9—Cl1120.09 (17)C3—C4—H4B109.4
C17—C16—C15121.5 (3)C5—C4—H4B109.4
C17—C16—Cl2117.6 (2)H4A—C4—H4B108.0
C15—C16—Cl2120.8 (2)C17—C18—C19120.3 (3)
C19—C20—C15121.9 (2)C17—C18—H18A119.8
C19—C20—H20A119.1C19—C18—H18A119.8
C7—N1—C1—C6126.4 (2)C20—C15—C16—C170.3 (4)
C7—N1—C1—C2−112.5 (2)C14—C15—C16—C17−179.7 (2)
N1—C1—C6—N2−60.1 (3)C20—C15—C16—Cl2−178.99 (19)
C2—C1—C6—N2178.69 (19)C14—C15—C16—Cl21.0 (3)
N1—C1—C6—C5179.2 (2)C16—C15—C20—C19−0.7 (4)
C2—C1—C6—C558.1 (3)C14—C15—C20—C19179.3 (2)
C5—C6—N2—C14−125.3 (2)C9—C10—C11—C12−0.5 (4)
C1—C6—N2—C14114.0 (2)C15—C16—C17—C18−0.2 (4)
C6—N2—C14—C15−178.0 (2)Cl2—C16—C17—C18179.1 (2)
C1—N1—C7—C8−173.03 (19)N1—C1—C2—C3−177.1 (2)
C9—C8—C7—N1−161.7 (2)C6—C1—C2—C3−57.3 (3)
C13—C8—C7—N123.4 (3)C1—C2—C3—C456.3 (3)
C9—C8—C13—C12−0.4 (3)N2—C6—C5—C4−177.2 (2)
C7—C8—C13—C12174.8 (2)C1—C6—C5—C4−57.3 (3)
N2—C14—C15—C203.3 (4)C8—C13—C12—C11−0.4 (4)
N2—C14—C15—C16−176.7 (2)C10—C11—C12—C130.9 (4)
C11—C10—C9—C8−0.4 (4)C15—C20—C19—C180.9 (4)
C11—C10—C9—Cl1178.1 (2)C2—C3—C4—C5−55.8 (3)
C13—C8—C9—C100.8 (3)C6—C5—C4—C356.3 (3)
C7—C8—C9—C10−174.3 (2)C16—C17—C18—C190.5 (4)
C13—C8—C9—Cl1−177.66 (17)C20—C19—C18—C17−0.8 (4)
C7—C8—C9—Cl17.3 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7A···Cl10.932.723.066 (2)103
C14—H14A···Cl20.932.683.076 (3)107
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (1R,2R)-N,N'-Bis[1-(2-pyrid-yl)ethyl-idene]cyclo-hexane-1,2-diamine.

Authors:  Muhammad Saleh Salga; Hamid Khaledi; Hapipah Mohd Ali; Rustam Puteh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-17

3.  (1R,2R,E,E)-N,N'-Bis(4-chloro-benzyl-idene)cyclo-hexane-1,2-diamine.

Authors:  Hamid Arvinnezhad; Khosrow Jadidi; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-14

4.  cis-N,N-Bis(2-hy-droxy-benzyl-idene)cyclo-hexane-1,2-diamine.

Authors:  Ping Fan; Chunhua Ge; Xiangdong Zhang; Rui Zhang; Su Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23
  4 in total
  1 in total

1.  (Z)-2,3-Di-chloro-1,4-bis-(4-chloro-phen-yl)but-2-ene-1,4-dione.

Authors:  Ram K Tittal; Satish Kumar; R N Ram
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-11
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.