Literature DB >> 22347025

(1R,2R,E,E)-N,N'-Bis(4-chloro-benzyl-idene)cyclo-hexane-1,2-diamine.

Hamid Arvinnezhad1, Khosrow Jadidi, Behrouz Notash.   

Abstract

The title Schiff base ligand, C(20)H(20)Cl(2)N(2), was prepared by condensation of commercially available p-chloro-benzalde-hyde and (R,R)-1,2-diammonium-cyclo-hexane mono-(+)-tartrate. The cyclo-hexane ring adopts a chair conformation. The dihedral angle between the two aromatic rings is 62.52 (8)°. The crystal structure is stabilized by an inter-molecular C-H⋯Cl hydrogen bond.

Entities:  

Year:  2012        PMID: 22347025      PMCID: PMC3275080          DOI: 10.1107/S1600536812000724

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of some Schiff bases derived from cyclo­hexane-1,2-diamine, see: Fan et al. (2011 ▶); Glidewell et al. (2005 ▶); Saleh Salga et al. (2010 ▶). For applications of chiral Schiff base ligands, see: Da Silva et al. (2011 ▶); Przybylski et al. (2009 ▶); Gupta & Sutar (2008 ▶); Dhar & Taploo (1982 ▶); Munslow et al. (2001 ▶); Gillespie et al. (2002 ▶); Kureshy et al. (2001 ▶); Takenaka et al. (2002 ▶). For the synthesis of the title compound, see: Larrow & Jacobsen (1998 ▶); Periasamy et al. (2001 ▶).

Experimental

Crystal data

C20H20Cl2N2 M = 359.28 Orthorhombic, a = 5.5058 (11) Å b = 15.734 (3) Å c = 21.302 (4) Å V = 1845.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 120 K 0.5 × 0.23 × 0.15 mm

Data collection

Stoe IPDS 2T diffractometer 12920 measured reflections 4973 independent reflections 4065 reflections with I > 2σ(I) R int = 0.088

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.113 S = 1.13 4973 reflections 218 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.34 e Å−3 Absolute structure: Flack (1983 ▶), 2099 Friedel pairs Flack parameter: −0.11 (7) Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000724/bt5777sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000724/bt5777Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000724/bt5777Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H20Cl2N2F(000) = 752
Mr = 359.28Dx = 1.293 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4973 reflections
a = 5.5058 (11) Åθ = 2.3–29.2°
b = 15.734 (3) ŵ = 0.36 mm1
c = 21.302 (4) ÅT = 120 K
V = 1845.4 (6) Å3Needle, colorless
Z = 40.5 × 0.23 × 0.15 mm
Stoe IPDS 2T diffractometer4065 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.088
graphiteθmax = 29.2°, θmin = 2.3°
Detector resolution: 0.15 mm pixels mm-1h = −7→7
rotation method scansk = −19→21
12920 measured reflectionsl = −29→29
4973 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.054w = 1/[σ2(Fo2) + (0.0326P)2 + 0.5925P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.113(Δ/σ)max = 0.002
S = 1.13Δρmax = 0.29 e Å3
4973 reflectionsΔρmin = −0.34 e Å3
218 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0059 (11)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2099 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.11 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.02567 (12)1.06658 (5)0.95529 (3)0.03732 (17)
Cl21.02450 (16)0.61772 (5)1.03022 (3)0.0446 (2)
C90.5215 (5)1.08153 (16)0.83309 (11)0.0302 (5)
H90.64981.11820.82460.036*
N20.9823 (4)0.78245 (13)0.73687 (9)0.0292 (5)
C31.0135 (5)0.91257 (17)0.56137 (10)0.0316 (5)
H3A0.97290.93100.51920.038*
H3B1.15980.94220.57420.038*
C180.9686 (5)0.65212 (16)0.95383 (11)0.0333 (6)
N10.6607 (4)0.92267 (14)0.71446 (9)0.0284 (5)
C120.1355 (5)0.97300 (18)0.85723 (11)0.0293 (5)
H120.00500.93710.86550.035*
C80.4930 (5)1.00840 (15)0.79711 (10)0.0258 (5)
C100.3615 (5)1.10062 (18)0.88148 (12)0.0319 (6)
H100.38251.14930.90570.038*
C70.6765 (5)0.98715 (16)0.74955 (10)0.0256 (5)
H70.81021.02280.74510.031*
C140.8364 (5)0.73657 (17)0.76733 (12)0.0302 (6)
H140.69160.72060.74820.036*
C110.1706 (5)1.04590 (17)0.89291 (11)0.0279 (5)
C10.8652 (5)0.90495 (16)0.67300 (11)0.0269 (5)
H11.00990.93470.68840.032*
C150.8846 (5)0.70693 (17)0.83196 (12)0.0301 (6)
C20.8063 (5)0.93512 (19)0.60586 (11)0.0301 (5)
H2A0.65750.90830.59160.036*
H2B0.78140.99620.60580.036*
C171.1362 (6)0.70438 (18)0.92486 (12)0.0339 (6)
H171.27610.72100.94600.041*
C130.2957 (5)0.95433 (17)0.80948 (11)0.0285 (6)
H130.27320.90570.78540.034*
C41.0598 (6)0.81726 (19)0.56146 (11)0.0366 (6)
H4A1.19630.80450.53430.044*
H4B0.91830.78800.54510.044*
C51.1139 (6)0.78524 (18)0.62769 (12)0.0349 (6)
H5A1.13230.72390.62680.042*
H5B1.26580.80960.64210.042*
C60.9115 (5)0.80889 (17)0.67350 (11)0.0292 (6)
H60.76210.77920.66150.035*
C190.7602 (5)0.6264 (2)0.92339 (13)0.0382 (7)
H190.64860.59120.94330.046*
C161.0941 (5)0.73191 (17)0.86384 (12)0.0328 (6)
H161.20620.76720.84410.039*
C200.7205 (5)0.65407 (19)0.86231 (13)0.0372 (6)
H200.58090.63680.84130.045*
U11U22U33U12U13U23
Cl10.0353 (3)0.0513 (4)0.0254 (2)0.0067 (3)0.0022 (3)−0.0030 (3)
Cl20.0633 (5)0.0419 (4)0.0286 (3)0.0112 (4)0.0068 (3)0.0108 (3)
C90.0313 (13)0.0296 (12)0.0298 (10)−0.0005 (12)−0.0019 (11)−0.0020 (10)
N20.0323 (11)0.0293 (10)0.0260 (9)−0.0006 (10)−0.0026 (10)0.0040 (8)
C30.0306 (13)0.0398 (14)0.0244 (10)0.0026 (12)0.0017 (11)0.0063 (10)
C180.0463 (15)0.0281 (12)0.0257 (10)0.0069 (13)0.0033 (12)0.0060 (10)
N10.0292 (11)0.0311 (11)0.0248 (9)0.0003 (10)−0.0013 (8)−0.0026 (9)
C120.0284 (13)0.0353 (14)0.0242 (11)−0.0005 (12)−0.0041 (10)0.0025 (11)
C80.0280 (13)0.0271 (12)0.0221 (9)0.0014 (11)−0.0050 (10)0.0011 (8)
C100.0356 (14)0.0317 (14)0.0283 (11)0.0033 (12)−0.0057 (11)−0.0058 (10)
C70.0286 (12)0.0261 (12)0.0223 (10)−0.0007 (10)−0.0018 (10)0.0039 (10)
C140.0313 (14)0.0307 (14)0.0287 (12)−0.0028 (12)0.0007 (11)0.0002 (11)
C110.0291 (12)0.0340 (14)0.0206 (10)0.0089 (11)−0.0021 (10)0.0017 (10)
C10.0267 (12)0.0299 (13)0.0240 (10)−0.0016 (11)0.0006 (10)−0.0006 (10)
C150.0341 (13)0.0268 (13)0.0295 (12)0.0005 (11)0.0025 (11)0.0038 (10)
C20.0307 (12)0.0337 (14)0.0259 (11)0.0052 (12)0.0000 (10)0.0050 (11)
C170.0394 (15)0.0322 (14)0.0301 (13)−0.0022 (13)−0.0025 (11)0.0001 (11)
C130.0346 (13)0.0285 (13)0.0225 (10)−0.0002 (11)−0.0058 (10)0.0001 (10)
C40.0426 (16)0.0417 (15)0.0253 (11)0.0037 (14)0.0015 (11)−0.0037 (11)
C50.0404 (16)0.0330 (14)0.0312 (13)0.0088 (13)0.0005 (12)0.0006 (11)
C60.0341 (14)0.0299 (13)0.0235 (11)0.0002 (12)−0.0031 (10)0.0020 (10)
C190.0355 (15)0.0385 (16)0.0405 (14)−0.0014 (13)0.0086 (12)0.0122 (13)
C160.0362 (15)0.0300 (14)0.0323 (13)−0.0047 (12)0.0008 (11)0.0062 (11)
C200.0313 (14)0.0388 (16)0.0415 (15)−0.0053 (13)0.0012 (12)0.0060 (13)
Cl1—C111.743 (3)C14—C151.478 (4)
Cl2—C181.742 (2)C14—H140.9300
C9—C101.389 (4)C1—C61.533 (4)
C9—C81.391 (3)C1—C21.541 (3)
C9—H90.9300C1—H10.9800
N2—C141.260 (3)C15—C201.388 (4)
N2—C61.466 (3)C15—C161.395 (4)
C3—C41.521 (4)C2—H2A0.9700
C3—C21.525 (3)C2—H2B0.9700
C3—H3A0.9700C17—C161.390 (3)
C3—H3B0.9700C17—H170.9300
C18—C191.379 (4)C13—H130.9300
C18—C171.382 (4)C4—C51.527 (4)
N1—C71.263 (3)C4—H4A0.9700
N1—C11.458 (3)C4—H4B0.9700
C12—C131.378 (4)C5—C61.527 (4)
C12—C111.389 (4)C5—H5A0.9700
C12—H120.9300C5—H5B0.9700
C8—C131.404 (4)C6—H60.9800
C8—C71.469 (3)C19—C201.390 (4)
C10—C111.380 (4)C19—H190.9300
C10—H100.9300C16—H160.9300
C7—H70.9300C20—H200.9300
C10—C9—C8121.1 (3)C16—C15—C14120.9 (2)
C10—C9—H9119.5C3—C2—C1110.3 (2)
C8—C9—H9119.5C3—C2—H2A109.6
C14—N2—C6117.9 (2)C1—C2—H2A109.6
C4—C3—C2110.7 (2)C3—C2—H2B109.6
C4—C3—H3A109.5C1—C2—H2B109.6
C2—C3—H3A109.5H2A—C2—H2B108.1
C4—C3—H3B109.5C18—C17—C16119.5 (3)
C2—C3—H3B109.5C18—C17—H17120.3
H3A—C3—H3B108.1C16—C17—H17120.3
C19—C18—C17121.4 (2)C12—C13—C8120.3 (2)
C19—C18—Cl2119.7 (2)C12—C13—H13119.9
C17—C18—Cl2119.0 (2)C8—C13—H13119.9
C7—N1—C1117.3 (2)C3—C4—C5111.0 (2)
C13—C12—C11119.4 (3)C3—C4—H4A109.4
C13—C12—H12120.3C5—C4—H4A109.4
C11—C12—H12120.3C3—C4—H4B109.4
C9—C8—C13119.0 (2)C5—C4—H4B109.4
C9—C8—C7119.4 (2)H4A—C4—H4B108.0
C13—C8—C7121.5 (2)C6—C5—C4111.6 (2)
C11—C10—C9118.6 (2)C6—C5—H5A109.3
C11—C10—H10120.7C4—C5—H5A109.3
C9—C10—H10120.7C6—C5—H5B109.3
N1—C7—C8122.9 (2)C4—C5—H5B109.3
N1—C7—H7118.5H5A—C5—H5B108.0
C8—C7—H7118.5N2—C6—C5109.0 (2)
N2—C14—C15123.1 (3)N2—C6—C1109.3 (2)
N2—C14—H14118.4C5—C6—C1110.9 (2)
C15—C14—H14118.4N2—C6—H6109.2
C10—C11—C12121.6 (2)C5—C6—H6109.2
C10—C11—Cl1119.3 (2)C1—C6—H6109.2
C12—C11—Cl1119.0 (2)C18—C19—C20118.6 (3)
N1—C1—C6108.2 (2)C18—C19—H19120.7
N1—C1—C2109.9 (2)C20—C19—H19120.7
C6—C1—C2110.2 (2)C17—C16—C15120.4 (3)
N1—C1—H1109.5C17—C16—H16119.8
C6—C1—H1109.5C15—C16—H16119.8
C2—C1—H1109.5C15—C20—C19121.5 (3)
C20—C15—C16118.7 (2)C15—C20—H20119.3
C20—C15—C14120.4 (3)C19—C20—H20119.3
C10—C9—C8—C131.3 (4)C9—C8—C13—C12−1.0 (4)
C10—C9—C8—C7−175.4 (2)C7—C8—C13—C12175.6 (2)
C8—C9—C10—C11−0.7 (4)C2—C3—C4—C5−56.8 (3)
C1—N1—C7—C8−174.9 (2)C3—C4—C5—C655.3 (3)
C9—C8—C7—N1−178.8 (2)C14—N2—C6—C5−127.0 (3)
C13—C8—C7—N14.6 (4)C14—N2—C6—C1111.7 (3)
C6—N2—C14—C15−178.9 (2)C4—C5—C6—N2−175.6 (2)
C9—C10—C11—C12−0.2 (4)C4—C5—C6—C1−55.2 (3)
C9—C10—C11—Cl1177.6 (2)N1—C1—C6—N2−63.4 (3)
C13—C12—C11—C100.5 (4)C2—C1—C6—N2176.4 (2)
C13—C12—C11—Cl1−177.32 (19)N1—C1—C6—C5176.4 (2)
C7—N1—C1—C6138.6 (2)C2—C1—C6—C556.2 (3)
C7—N1—C1—C2−101.0 (3)C17—C18—C19—C200.0 (4)
N2—C14—C15—C20−177.8 (3)Cl2—C18—C19—C20−179.5 (2)
N2—C14—C15—C162.7 (4)C18—C17—C16—C15−0.1 (4)
C4—C3—C2—C158.1 (3)C20—C15—C16—C17−0.2 (4)
N1—C1—C2—C3−176.9 (2)C14—C15—C16—C17179.3 (3)
C6—C1—C2—C3−57.8 (3)C16—C15—C20—C190.4 (4)
C19—C18—C17—C160.2 (4)C14—C15—C20—C19−179.1 (3)
Cl2—C18—C17—C16179.7 (2)C18—C19—C20—C15−0.3 (4)
C11—C12—C13—C80.1 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3A···Cl1i0.972.813.525 (3)131.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯Cl1i0.972.813.525 (3)131

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Enantioselective aziridination using copper complexes of biaryl Schiff bases.

Authors:  Kevin M Gillespie; Christopher J Sanders; Paul O'Shaughnessy; Ian Westmoreland; Christopher P Thickitt; Peter Scott
Journal:  J Org Chem       Date:  2002-05-17       Impact factor: 4.354

3.  Bidentate carbenoid ester coordination in ruthenium(II) Schiff-base complexes leading to excellent levels of diastereo- and enantioselectivity in catalytic alkene cyclopropanation.

Authors:  I J Munslow; K M Gillespie; R J Deeth; P Scott
Journal:  Chem Commun (Camb)       Date:  2001-09-07       Impact factor: 6.222

4.  (1R,2R)-N,N'-Bis[1-(2-pyrid-yl)ethyl-idene]cyclo-hexane-1,2-diamine.

Authors:  Muhammad Saleh Salga; Hamid Khaledi; Hapipah Mohd Ali; Rustam Puteh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-17

5.  cis-N,N-Bis(2-hy-droxy-benzyl-idene)cyclo-hexane-1,2-diamine.

Authors:  Ping Fan; Chunhua Ge; Xiangdong Zhang; Rui Zhang; Su Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23
  5 in total
  1 in total

1.  rac-(E,E)-N,N'-Bis(2-chloro-benzyl-idene)cyclo-hexane-1,2-di-amine.

Authors:  Ismail Warad; Mousa Al-Noaimi; Salim F Haddad; Yasmin Al-Demeri; Belkheir Hammouti
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-12
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.