Literature DB >> 21579148

(1R,2R)-N,N'-Bis[1-(2-pyrid-yl)ethyl-idene]cyclo-hexane-1,2-diamine.

Muhammad Saleh Salga, Hamid Khaledi, Hapipah Mohd Ali, Rustam Puteh.   

Abstract

In the title compound, C(20)H(24)N(4), the cyclo-hexane ring adopts a chair conformation with the two imine groups linked at equatorial positions. The two halves of the mol-ecule are related by a crystallographic twofold rotation axis. The dihedral angle between the pyridine rings is 75.73 (3)°.

Entities:  

Year:  2010        PMID: 21579148      PMCID: PMC2979034          DOI: 10.1107/S1600536810013607

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of some Schiff bases derived from cyclo­hexane-1,2-diamine, see: Aslantaş et al. (2007 ▶); Glidewell et al. (2005 ▶); Liu et al. (2006 ▶).

Experimental

Crystal data

C20H24N4 M = 320.43 Monoclinic, a = 18.0605 (3) Å b = 8.9371 (1) Å c = 11.1076 (2) Å β = 97.970 (1)° V = 1775.54 (5) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 100 K 0.49 × 0.37 × 0.35 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.975 8186 measured reflections 2044 independent reflections 1833 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.121 S = 1.06 2044 reflections 110 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810013607/pv2274sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013607/pv2274Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24N4F(000) = 688
Mr = 320.43Dx = 1.199 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4367 reflections
a = 18.0605 (3) Åθ = 2.3–30.3°
b = 8.9371 (1) ŵ = 0.07 mm1
c = 11.1076 (2) ÅT = 100 K
β = 97.970 (1)°Block, pale yellow
V = 1775.54 (5) Å30.49 × 0.37 × 0.35 mm
Z = 4
Bruker APEXII CCD diffractometer2044 independent reflections
Radiation source: fine-focus sealed tube1833 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→22
Tmin = 0.965, Tmax = 0.975k = −11→11
8186 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0714P)2 + 1.0614P] where P = (Fo2 + 2Fc2)/3
2044 reflections(Δ/σ)max < 0.001
110 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.07952 (5)0.04557 (10)0.74621 (8)0.0160 (2)
N20.19413 (5)0.35854 (10)0.82811 (8)0.0188 (2)
C10.22757 (6)0.47046 (13)0.77554 (10)0.0214 (3)
H10.26350.52940.82520.026*
C20.21265 (6)0.50475 (13)0.65292 (10)0.0212 (3)
H20.23680.58650.61990.025*
C30.16173 (7)0.41697 (13)0.57979 (10)0.0233 (3)
H30.15040.43720.49530.028*
C40.12752 (6)0.29891 (12)0.63160 (10)0.0208 (3)
H40.09290.23620.58310.025*
C50.14487 (6)0.27409 (11)0.75622 (9)0.0154 (2)
C60.10752 (6)0.14970 (11)0.81635 (9)0.0160 (2)
C70.10754 (7)0.16392 (14)0.95159 (10)0.0269 (3)
H7A0.07340.24430.96790.040*
H7B0.15820.18730.99090.040*
H7C0.09100.06940.98380.040*
C80.03861 (5)−0.08031 (11)0.78929 (9)0.0151 (2)
H80.0327−0.06500.87660.018*
C90.08258 (6)−0.22419 (11)0.77538 (9)0.0169 (2)
H9A0.0978−0.22720.69310.020*
H9B0.1285−0.22420.83540.020*
C100.03633 (6)−0.36338 (12)0.79419 (10)0.0188 (3)
H10A0.0656−0.45420.78120.023*
H10B0.0248−0.36530.87870.023*
U11U22U33U12U13U23
N10.0176 (4)0.0139 (4)0.0170 (4)−0.0002 (3)0.0038 (3)0.0006 (3)
N20.0187 (5)0.0183 (5)0.0191 (4)−0.0021 (3)0.0020 (3)−0.0008 (3)
C10.0197 (5)0.0199 (6)0.0239 (5)−0.0045 (4)0.0007 (4)−0.0011 (4)
C20.0208 (5)0.0178 (5)0.0253 (6)−0.0030 (4)0.0040 (4)0.0038 (4)
C30.0283 (6)0.0224 (6)0.0186 (5)−0.0045 (4)0.0011 (4)0.0038 (4)
C40.0244 (6)0.0186 (5)0.0184 (5)−0.0052 (4)0.0002 (4)0.0000 (4)
C50.0154 (5)0.0127 (5)0.0184 (5)0.0017 (4)0.0039 (4)−0.0007 (4)
C60.0155 (5)0.0157 (5)0.0173 (5)0.0013 (4)0.0039 (4)0.0001 (4)
C70.0362 (7)0.0279 (6)0.0176 (5)−0.0114 (5)0.0075 (5)−0.0030 (4)
C80.0179 (5)0.0134 (5)0.0140 (4)−0.0012 (4)0.0027 (4)0.0004 (4)
C90.0176 (5)0.0152 (5)0.0179 (5)0.0008 (4)0.0023 (4)0.0010 (4)
C100.0215 (6)0.0136 (5)0.0211 (5)0.0015 (4)0.0020 (4)0.0019 (4)
N1—C61.2726 (14)C6—C71.5075 (15)
N1—C81.4623 (12)C7—H7A0.9800
N2—C51.3422 (14)C7—H7B0.9800
N2—C11.3432 (14)C7—H7C0.9800
C1—C21.3856 (16)C8—C91.5304 (14)
C1—H10.9500C8—C8i1.5392 (19)
C2—C31.3833 (16)C8—H81.0000
C2—H20.9500C9—C101.5288 (14)
C3—C41.3874 (15)C9—H9A0.9900
C3—H30.9500C9—H9B0.9900
C4—C51.3940 (15)C10—C10i1.526 (2)
C4—H40.9500C10—H10A0.9900
C5—C61.5039 (14)C10—H10B0.9900
C6—N1—C8122.56 (9)H7A—C7—H7B109.5
C5—N2—C1117.45 (9)C6—C7—H7C109.5
N2—C1—C2123.65 (10)H7A—C7—H7C109.5
N2—C1—H1118.2H7B—C7—H7C109.5
C2—C1—H1118.2N1—C8—C9108.70 (8)
C3—C2—C1118.33 (10)N1—C8—C8i105.88 (7)
C3—C2—H2120.8C9—C8—C8i112.63 (6)
C1—C2—H2120.8N1—C8—H8109.8
C2—C3—C4119.06 (10)C9—C8—H8109.8
C2—C3—H3120.5C8i—C8—H8109.8
C4—C3—H3120.5C10—C9—C8111.64 (8)
C3—C4—C5118.76 (10)C10—C9—H9A109.3
C3—C4—H4120.6C8—C9—H9A109.3
C5—C4—H4120.6C10—C9—H9B109.3
N2—C5—C4122.72 (10)C8—C9—H9B109.3
N2—C5—C6116.91 (9)H9A—C9—H9B108.0
C4—C5—C6120.37 (9)C10i—C10—C9110.46 (7)
N1—C6—C5115.68 (9)C10i—C10—H10A109.6
N1—C6—C7128.08 (10)C9—C10—H10A109.6
C5—C6—C7116.23 (9)C10i—C10—H10B109.6
C6—C7—H7A109.5C9—C10—H10B109.6
C6—C7—H7B109.5H10A—C10—H10B108.1
  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  (1R,2R,E,E)-N,N'-Bis(4-chloro-benzyl-idene)cyclo-hexane-1,2-diamine.

Authors:  Hamid Arvinnezhad; Khosrow Jadidi; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-14

2.  rac-(E,E)-N,N'-Bis(2-chloro-benzyl-idene)cyclo-hexane-1,2-di-amine.

Authors:  Ismail Warad; Mousa Al-Noaimi; Salim F Haddad; Yasmin Al-Demeri; Belkheir Hammouti
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-12
  2 in total

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