Literature DB >> 24025123

Correlated ligand dynamics in oxyiron picket fence porphyrins: structural and Mössbauer investigations.

Jianfeng Li1, Bruce C Noll, Allen G Oliver, Charles E Schulz, W Robert Scheidt.   

Abstract

Disorder in the position of the dioxygen ligand is a well-known problem in dioxygen complexes and, in particular, those of picket fence porphyrin species. The dynamics of Fe-O2 rotation and tert-butyl motion in three different picket fence porphyrin derivatives has been studied by a combination of multitemperature X-ray structural studies and Mössbauer spectroscopy. Structural studies show that the motions of the dioxygen ligand also require motions of the protecting pickets of the ligand binding pocket. The two motions appear to be correlated, and the temperature-dependent change in the O2 occupancies cannot be governed by a simple Boltzmann distribution. The three [Fe(TpivPP)(RIm)(O2)] derivatives studied have RIm = 1-methyl-, 1-ethyl-, or 2-methylimidazole. In all three species there is a preferred orientation of the Fe-O2 moiety with respect to the trans imidazole ligand and the population of this orientation increases with decreasing temperature. In the 1-MeIm and 1-EtIm species the Fe-O2 unit is approximately perpendicular to the imidazole plane, whereas in the 2-MeHIm species the Fe-O2 unit is approximately parallel. This reflects the low energy required for rotation of the Fe-O2 unit and the small energy differences in populating the possible pocket quadrants. All dioxygen complexes have a crystallographically required 2-fold axis of symmetry that limits the accuracy of the determined Fe-O2 geometry. However, the 80 K structure of the 2-MeHIm derivative allowed for resolution of the two bonded oxygen atom positions and provided the best geometric description for the Fe-O2 unit. The values determined are Fe-O = 1.811(5) Å, Fe-O-O = 118.2(9)°, O-O = 1.281(12) Å, and an off-axis tilt of 6.2°. Demonstration of the off-axis tilt is a first. We present detailed temperature-dependent simulations of the Mössbauer spectra that model the changing value of the quadrupole splitting and line widths. Residuals to fits are poorer at higher temperature. We believe that this is consistent with the idea that population of the two conformers is related to the concomitant motions of both Fe-O2 rotations and motions of the protecting tert-butyl pickets.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24025123      PMCID: PMC3827975          DOI: 10.1021/ja408431z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  New software for searching the Cambridge Structural Database and visualizing crystal structures.

Authors:  Ian J Bruno; Jason C Cole; Paul R Edgington; Magnus Kessler; Clare F Macrae; Patrick McCabe; Jonathan Pearson; Robin Taylor
Journal:  Acta Crystallogr B       Date:  2002-05-29

Review 2.  Solid-state structures of metalloporphyrin NO(x )compounds.

Authors:  Graeme R A Wyllie; W Robert Scheidt
Journal:  Chem Rev       Date:  2002-04       Impact factor: 60.622

3.  NATURE OF THE IRON-OXYGEN BOND IN OXYHAEMOGLOBIN.

Authors:  J J WEISS
Journal:  Nature       Date:  1964-07-11       Impact factor: 49.962

4.  NATURE OF THE IRON-OXYGEN BOND IN OXYHAEMOGLOBIN.

Authors:  J J WEISS
Journal:  Nature       Date:  1964-04-04       Impact factor: 49.962

5.  Structure of the deoxymyoglobin model [Fe(TPP)(2-MeHIm)] reveals unusual porphyrin core distortions.

Authors:  Mary K Ellison; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2002-04-22       Impact factor: 5.165

6.  Electronic configuration of high-spin imidazole-ligated iron(II) octaethylporphyrinates.

Authors:  Chuanjiang Hu; Jin An; Bruce C Noll; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2006-05-15       Impact factor: 5.165

7.  Iron porphyrins with different imidazole ligands. A theoretical comparative study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Phys Chem A       Date:  2010-09-09       Impact factor: 2.781

8.  Nature of O2 and CO binding to metalloporphyrins and heme proteins.

Authors:  J P Collman; J I Brauman; T R Halbert; K S Suslick
Journal:  Proc Natl Acad Sci U S A       Date:  1976-10       Impact factor: 11.205

9.  Resonance Raman investigation of dioxygen bonding in oxycobaltmyoglobin and oxycobalthemoglobin: structural implication of splittings of the bound O--O stretching vibration.

Authors:  M Tsubaki; N T Yu
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

10.  Ozone model for bonding of an O2 to heme in oxyhemoglobin.

Authors:  W A Goddard; B D Olafson
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

View more
  13 in total

1.  Resonant inelastic X-ray scattering determination of the electronic structure of oxyhemoglobin and its model complex.

Authors:  James J Yan; Thomas Kroll; Michael L Baker; Samuel A Wilson; Richard Decréau; Marcus Lundberg; Dimosthenis Sokaras; Pieter Glatzel; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

Review 2.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 3.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

Review 4.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

5.  3D Motions of Iron in Six-Coordinate {FeNO}(7) Hemes by Nuclear Resonance Vibration Spectroscopy.

Authors:  Qian Peng; Jeffrey W Pavlik; Nathan J Silvernail; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Chemistry       Date:  2016-03-21       Impact factor: 5.236

Review 6.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

7.  A structurally-characterized peroxomanganese(iv) porphyrin from reversible O2 binding within a metal-organic framework.

Authors:  Audrey T Gallagher; Jung Yoon Lee; Venkatesan Kathiresan; John S Anderson; Brian M Hoffman; T David Harris
Journal:  Chem Sci       Date:  2017-12-14       Impact factor: 9.825

8.  Porphyrinoid rotaxanes: building a mechanical picket fence.

Authors:  T H Ngo; J Labuta; G N Lim; W A Webre; F D'Souza; P A Karr; J E M Lewis; J P Hill; K Ariga; S M Goldup
Journal:  Chem Sci       Date:  2017-08-04       Impact factor: 9.825

9.  Comprehensive Fe-ligand vibration identification in {FeNO}6 hemes.

Authors:  Jianfeng Li; Qian Peng; Allen G Oliver; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2014-12-18       Impact factor: 15.419

10.  Crystal structure of (methanol-κO)[5,10,15,20-tetra-kis-(2-amino-phen-yl)porphyrinato-κ4N]zinc(II)-chloro-form-methanol (1/1/1).

Authors:  Lisa Leben; Christian Näther; Rainer Herges
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-21
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.