Literature DB >> 24915074

Automation in biological crystallization.

Patrick Shaw Stewart1, Jochen Mueller-Dieckmann2.   

Abstract

Crystallization remains the bottleneck in the crystallographic process leading from a gene to a three-dimensional model of the encoded protein or RNA. Automation of the individual steps of a crystallization experiment, from the preparation of crystallization cocktails for initial or optimization screens to the imaging of the experiments, has been the response to address this issue. Today, large high-throughput crystallization facilities, many of them open to the general user community, are capable of setting up thousands of crystallization trials per day. It is thus possible to test multiple constructs of each target for their ability to form crystals on a production-line basis. This has improved success rates and made crystallization much more convenient. High-throughput crystallization, however, cannot relieve users of the task of producing samples of high quality. Moreover, the time gained from eliminating manual preparations must now be invested in the careful evaluation of the increased number of experiments. The latter requires a sophisticated data and laboratory information-management system. A review of the current state of automation at the individual steps of crystallization with specific attention to the automation of optimization is given.

Keywords:  automation; crystallization

Mesh:

Year:  2014        PMID: 24915074      PMCID: PMC4051518          DOI: 10.1107/S2053230X14011601

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  44 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  From information management to protein annotation: preparing protein structures for drug discovery.

Authors:  Tom Peat; Eric de La Fortelle; Janice Culpepper; Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

3.  CLIMS: crystallography laboratory information management system.

Authors:  Kate F Fulton; Shaun Ervine; Noel Faux; Richard Forster; Rachel A Jodun; Wayson Ly; Lee Robilliard; Jai Sonsini; Dan Whelan; James C Whisstock; Ashley M Buckle
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-08-26

4.  On increasing protein-crystallization throughput for X-ray diffraction studies.

Authors:  Ashit K Shah; Zhi Jie Liu; Patrick D Stewart; Florian D Schubot; John P Rose; M Gary Newton; Bi Cheng Wang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-01-19

5.  Three-dimensional structure determination of proteins related to human health in their functional context at The Israel Structural Proteomics Center (ISPC). This paper was presented at ICCBM10.

Authors:  Shira Albeck; Yigal Burstein; Orly Dym; Yossi Jacobovitch; Nurit Levi; Ran Meged; Yigal Michael; Yoav Peleg; Jaime Prilusky; Gideon Schreiber; Israel Silman; Tamar Unger; Joel L Sussman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

6.  Development of high-performance X-ray transparent crystallization plates for in situ protein crystal screening and analysis.

Authors:  Ahmed S M Soliman; Matthew Warkentin; Benjamin Apker; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-06-11

7.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

8.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14

9.  Real-Time Protein Crystallization Image Acquisition and Classification System.

Authors:  Madhav Sigdel; Marc L Pusey; Ramazan S Aygun
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

10.  The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory.

Authors:  Chris Morris; Anne Pajon; Susanne L Griffiths; Ed Daniel; Marc Savitsky; Bill Lin; Jonathan M Diprose; Alan Wilter da Silva; Katya Pilicheva; Peter Troshin; Johannes van Niekerk; Neil Isaacs; James Naismith; Colin Nave; Richard Blake; Keith S Wilson; David I Stuart; Kim Henrick; Robert M Esnouf
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  1 in total

Review 1.  High-Throughput Crystallization Pipeline at the Crystallography Core Facility of the Institut Pasteur.

Authors:  Patrick Weber; Cédric Pissis; Rafael Navaza; Ariel E Mechaly; Frederick Saul; Pedro M Alzari; Ahmed Haouz
Journal:  Molecules       Date:  2019-12-05       Impact factor: 4.411

  1 in total

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