Literature DB >> 24001266

Peroxidase-type reactions suggest a heterolytic/nucleophilic O-O joining mechanism in the heme-dependent chlorite dismutase.

Jeffrey A Mayfield1, Béatrice Blanc, Kenton R Rodgers, Gudrun S Lukat-Rodgers, Jennifer L DuBois.   

Abstract

Heme-containing chlorite dismutases (Clds) catalyze a highly unusual O-O bond-forming reaction. The O-O cleaving reactions of hydrogen peroxide and peracetic acid (PAA) with the Cld from Dechloromonas aromatica (DaCld) were studied to better understand the Cl-O cleavage of the natural substrate and subsequent O-O bond formation. While reactions with H2O2 result in slow destruction of the heme, at acidic pH heterolytic cleavage of the O-O bond of PAA cleanly yields the ferryl porphyrin cation radical (compound I). At alkaline pH, the reaction proceeds more rapidly, and the first observed intermediate is a ferryl heme. Freeze-quench EPR confirmed that the latter has an uncoupled protein-based radical, indicating that compound I is the first intermediate formed at all pH values and that radical migration is faster at alkaline pH. These results suggest by analogy that two-electron Cl-O bond cleavage to yield a ferryl-porphyrin cation radical is the most likely initial step in O-O bond formation from chlorite.

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Year:  2013        PMID: 24001266      PMCID: PMC4390081          DOI: 10.1021/bi4005599

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  69 in total

1.  Role of the heme active site and protein environment in structure, spectra, and function of the cytochrome p450s.

Authors:  G H Loew; D L Harris
Journal:  Chem Rev       Date:  2000-02-09       Impact factor: 60.622

2.  Resonance Raman spectroscopy of Compound II and its decay in Mycobacterium tuberculosis catalase-peroxidase KatG and its isoniazid resistant mutant S315T.

Authors:  Sofia M Kapetanaki; Salem Chouchane; Shengwei Yu; Richard S Magliozzo; Johannes P M Schelvis
Journal:  J Inorg Biochem       Date:  2005-06       Impact factor: 4.155

3.  Resonance Raman spectra of horseradish peroxidase and bovine liver catalase compound I species. Evidence for predominant 2A2u pi-cation radical ground state configurations.

Authors:  W J Chuang; H E Van Wart
Journal:  J Biol Chem       Date:  1992-07-05       Impact factor: 5.157

4.  The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue.

Authors:  Toru Yoshida; Hideaki Tsuge; Hiroki Konno; Toru Hisabori; Yasushi Sugano
Journal:  FEBS J       Date:  2011-05-31       Impact factor: 5.542

5.  A kinetic study on the suicide inactivation of peroxidase by hydrogen peroxide.

Authors:  M B Arnao; M Acosta; J A del Río; R Varón; F García-Cánovas
Journal:  Biochim Biophys Acta       Date:  1990-10-18

6.  Oxygen transfer involving nonheme iron: the influence of leaving group ability on the rate constant for oxygen transfer to (EDTA)Fe(III) from peroxycarboxylic acids and hydroperoxides.

Authors:  P N Balasubramanian; T C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  1987-04       Impact factor: 11.205

7.  Radical autoxidation and autogenous O2 evolution in manganese-porphyrin catalyzed alkane oxidations with chlorite.

Authors:  LeGrande M Slaughter; James P Collman; Todd A Eberspacher; John I Brauman
Journal:  Inorg Chem       Date:  2004-08-23       Impact factor: 5.165

8.  Effect of Asp-235-->Asn substitution on the absorption spectrum and hydrogen peroxide reactivity of cytochrome c peroxidase.

Authors:  L B Vitello; J E Erman; M A Miller; J M Mauro; J Kraut
Journal:  Biochemistry       Date:  1992-11-24       Impact factor: 3.162

9.  Two [Fe(IV)=O Trp*] intermediates in M. tuberculosis catalase-peroxidase discriminated by multifrequency (9-285 GHz) EPR spectroscopy: reactivity toward isoniazid.

Authors:  Rahul Singh; Jack Switala; Peter C Loewen; Anabella Ivancich
Journal:  J Am Chem Soc       Date:  2007-12-04       Impact factor: 15.419

10.  Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.

Authors:  Joseph N Roberts; Rahul Singh; Jason C Grigg; Michael E P Murphy; Timothy D H Bugg; Lindsay D Eltis
Journal:  Biochemistry       Date:  2011-05-19       Impact factor: 3.162

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  12 in total

1.  Active Sites of O2-Evolving Chlorite Dismutases Probed by Halides and Hydroxides and New Iron-Ligand Vibrational Correlations.

Authors:  Zachary Geeraerts; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2017-08-17       Impact factor: 3.162

Review 2.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

Review 3.  Production of dioxygen in the dark: dismutases of oxyanions.

Authors:  Jennifer L DuBois; Sunil Ojha
Journal:  Met Ions Life Sci       Date:  2015

Review 4.  Substrate, product, and cofactor: The extraordinarily flexible relationship between the CDE superfamily and heme.

Authors:  Arianna I Celis; Jennifer L DuBois
Journal:  Arch Biochem Biophys       Date:  2015-03-14       Impact factor: 4.013

5.  Roles of High-valent Hemes and pH Dependence in Halite Decomposition Catalyzed by Chlorite Dismutase from Dechloromonas aromatica.

Authors:  Zachary Geeraerts; Olivia R Stiller; Gudrun S Lukat-Rodgers; Kenton R Rodgers
Journal:  ACS Catal       Date:  2022-07-06       Impact factor: 13.700

6.  Transiently produced hypochlorite is responsible for the irreversible inhibition of chlorite dismutase.

Authors:  Stefan Hofbauer; Clemens Gruber; Katharina F Pirker; Axel Sündermann; Irene Schaffner; Christa Jakopitsch; Chris Oostenbrink; Paul G Furtmüller; Christian Obinger
Journal:  Biochemistry       Date:  2014-05-06       Impact factor: 3.162

7.  The chlorite dismutase (HemQ) from Staphylococcus aureus has a redox-sensitive heme and is associated with the small colony variant phenotype.

Authors:  Jeffrey A Mayfield; Neal D Hammer; Richard C Kurker; Thomas K Chen; Sunil Ojha; Eric P Skaar; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2013-06-04       Impact factor: 5.157

8.  A dimeric chlorite dismutase exhibits O2-generating activity and acts as a chlorite antioxidant in Klebsiella pneumoniae MGH 78578.

Authors:  Arianna I Celis; Zachary Geeraerts; David Ngmenterebo; Melodie M Machovina; Richard C Kurker; Kumar Rajakumar; Anabella Ivancich; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2014-12-19       Impact factor: 3.162

9.  A randomized controlled phase IIb wound healing trial of cutaneous leishmaniasis ulcers with 0.045% pharmaceutical chlorite (DAC N-055) with and without bipolar high frequency electro-cauterization versus intralesional antimony in Afghanistan.

Authors:  Hans-Christian Stahl; Faridullah Ahmadi; Ulrike Schleicher; Rainer Sauerborn; Justo Lorenzo Bermejo; Mohammed Latif Amirih; Ibrahim Sakhayee; Christian Bogdan; Kurt-Wilhelm Stahl
Journal:  BMC Infect Dis       Date:  2014-11-25       Impact factor: 3.090

10.  From chlorite dismutase towards HemQ - the role of the proximal H-bonding network in haeme binding.

Authors:  Stefan Hofbauer; Barry D Howes; Nicola Flego; Katharina F Pirker; Irene Schaffner; Georg Mlynek; Kristina Djinović-Carugo; Paul G Furtmüller; Giulietta Smulevich; Christian Obinger
Journal:  Biosci Rep       Date:  2016-02-08       Impact factor: 3.840

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