Literature DB >> 23999926

Global fold of human cannabinoid type 2 receptor probed by solid-state 13C-, 15N-MAS NMR and molecular dynamics simulations.

Tomohiro Kimura1, Krishna Vukoti, Diane L Lynch, Dow P Hurst, Alan Grossfield, Michael C Pitman, Patricia H Reggio, Alexei A Yeliseev, Klaus Gawrisch.   

Abstract

The global fold of human n class="Gene">cannabinoid type 2 (CB2 ) receptor in the agonist-bound active state in lipid bilayers was investigated by solid-state (13)C- and (15)N magic-angle spinning (MAS) NMR, in combination with chemical-shift prediction from a structural model of the receptor obtained by microsecond-long molecular dynamics (MD) simulations. Uniformly (13)C- and (15)N-labeled CB2 receptor was expressed in milligram quantities by bacterial fermentation, purified, and functionally reconstituted into liposomes. (13)C MAS NMR spectra were recorded without sensitivity enhancement for direct comparison of Cα, Cβ, and C=O bands of superimposed resonances with predictions from protein structures generated by MD. The experimental NMR spectra matched the calculated spectra reasonably well indicating agreement of the global fold of the protein between experiment and simulations. In particular, the (13) C chemical shift distribution of Cα resonances was shown to be very sensitive to both the primary amino acid sequence and the secondary structure of CB2. Thus the shape of the Cα band can be used as an indicator of CB2 global fold. The prediction from MD simulations indicated that upon receptor activation a rather limited number of amino acid residues, mainly located in the extracellular Loop 2 and the second half of intracellular Loop 3, change their chemical shifts significantly (≥ 1.5 ppm for carbons and ≥ 5.0 ppm for nitrogens). Simulated two-dimensional (13) Cα(i)-(13)C=O(i) and (13)C=O(i)-(15)NH(i + 1) dipolar-interaction correlation spectra provide guidance for selective amino acid labeling and signal assignment schemes to study the molecular mechanism of activation of CB2 by solid-state MAS NMR.
Copyright © 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  CB2; G protein-coupled receptor; GPCR; cannabinoid receptor; molecular dynamics simulation; solid-state NMR

Mesh:

Substances:

Year:  2013        PMID: 23999926      PMCID: PMC4071771          DOI: 10.1002/prot.24411

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  59 in total

1.  Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2007-07-04       Impact factor: 2.835

2.  Residues accessible in the binding-site crevice of transmembrane helix 6 of the CB2 cannabinoid receptor.

Authors:  Ntsang M Nebane; Dow P Hurst; Carl A Carrasquer; Zhuanhong Qiao; Patricia H Reggio; Zhao-Hui Song
Journal:  Biochemistry       Date:  2008-12-30       Impact factor: 3.162

3.  Comparative analysis of NMR chemical shift predictions for proteins in the solid phase.

Authors:  Karsten Seidel; Manuel Etzkorn; Robert Schneider; Christian Ader; Marc Baldus
Journal:  Solid State Nucl Magn Reson       Date:  2009-01-20       Impact factor: 2.293

Review 4.  Emerging role of the cannabinoid receptor CB2 in immune regulation: therapeutic prospects for neuroinflammation.

Authors:  Guy A Cabral; LaToya Griffin-Thomas
Journal:  Expert Rev Mol Med       Date:  2009-01-20       Impact factor: 5.600

5.  Crystal structure of the ligand-free G-protein-coupled receptor opsin.

Authors:  Jung Hee Park; Patrick Scheerer; Klaus Peter Hofmann; Hui-Woog Choe; Oliver Peter Ernst
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

6.  Structure of a beta1-adrenergic G-protein-coupled receptor.

Authors:  Tony Warne; Maria J Serrano-Vega; Jillian G Baker; Rouslan Moukhametzianov; Patricia C Edwards; Richard Henderson; Andrew G W Leslie; Christopher G Tate; Gebhard F X Schertler
Journal:  Nature       Date:  2008-06-25       Impact factor: 49.962

7.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

8.  Expression and purification of CB2 for NMR studies in micellar solution.

Authors:  Dmitriy Krepkiy; Klaus Gawrisch; Alexei Yeliseev
Journal:  Protein Pept Lett       Date:  2007       Impact factor: 1.890

9.  Ligand-binding architecture of human CB2 cannabinoid receptor: evidence for receptor subtype-specific binding motif and modeling GPCR activation.

Authors:  Ying Pei; Richard W Mercier; Jenine K Anday; Ganesh A Thakur; Alexander M Zvonok; Dow Hurst; Patricia H Reggio; David R Janero; Alexandros Makriyannis
Journal:  Chem Biol       Date:  2008-11-24

10.  Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation.

Authors:  Shivani Ahuja; Viktor Hornak; Elsa C Y Yan; Natalie Syrett; Joseph A Goncalves; Amiram Hirshfeld; Martine Ziliox; Thomas P Sakmar; Mordechai Sheves; Philip J Reeves; Steven O Smith; Markus Eilers
Journal:  Nat Struct Mol Biol       Date:  2009-02-01       Impact factor: 15.369

View more
  9 in total

1.  Recombinant Expression and Purification of Cannabinoid Receptor CB2, a G Protein-Coupled Receptor.

Authors:  Alexei A Yeliseev
Journal:  Methods Mol Biol       Date:  2021

2.  Expression and Preparation of a G-Protein-Coupled Cannabinoid Receptor CB2 for NMR Structural Studies.

Authors:  Alexei Yeliseev
Journal:  Curr Protoc Protein Sci       Date:  2019-01-09

3.  Structural characterization of triple transmembrane domain containing fragments of a yeast G protein-coupled receptor in an organic : aqueous environment by solution-state NMR spectroscopy.

Authors:  Katrina E Fracchiolla; Leah S Cohen; Boris Arshava; Martin Poms; Oliver Zerbe; Jeffrey M Becker; Fred Naider
Journal:  J Pept Sci       Date:  2015-02-02       Impact factor: 1.905

Review 4.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

5.  Molecular Dynamics Methodologies for Probing Cannabinoid Ligand/Receptor Interaction.

Authors:  Diane L Lynch; Dow P Hurst; Derek M Shore; Mike C Pitman; Patricia H Reggio
Journal:  Methods Enzymol       Date:  2017-07-04       Impact factor: 1.600

6.  Expression and NMR Structural Studies of Isotopically Labeled Cannabinoid Receptor Type II.

Authors:  Alexei Yeliseev; Klaus Gawrisch
Journal:  Methods Enzymol       Date:  2017-07-11       Impact factor: 1.600

Review 7.  Applications of NMR to membrane proteins.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

Review 8.  Large-scale production and protein engineering of G protein-coupled receptors for structural studies.

Authors:  Dalibor Milić; Dmitry B Veprintsev
Journal:  Front Pharmacol       Date:  2015-03-31       Impact factor: 5.810

9.  Thermostability of a recombinant G protein-coupled receptor expressed at high level in mammalian cell culture.

Authors:  Alexei Yeliseev; Arjen van den Berg; Lioudmila Zoubak; Kirk Hines; Sam Stepnowski; Kyle Williston; Wanhua Yan; Klaus Gawrisch; Jonathan Zmuda
Journal:  Sci Rep       Date:  2020-10-08       Impact factor: 4.996

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.