Literature DB >> 28750815

Molecular Dynamics Methodologies for Probing Cannabinoid Ligand/Receptor Interaction.

Diane L Lynch1, Dow P Hurst2, Derek M Shore2, Mike C Pitman2, Patricia H Reggio2.   

Abstract

The cannabinoid type 1 and 2 G-protein-coupled receptors are currently important pharmacological targets with significant drug discovery potential. These receptors have been shown to display functional selectivity or biased agonism, a property currently thought to have substantial therapeutic potential. Although recent advances in crystallization techniques have provided a wealth of structural information about this important class of membrane-embedded proteins, these structures lack dynamical information. In order to fully understand the interplay of structure and function for this important class of proteins, complementary techniques that address the dynamical aspects of their function are required such as NMR as well as a variety of other spectroscopies. Complimentary to these experimental approaches is molecular dynamics, which has been effectively used to help unravel, at the atomic level, the dynamics of ligand binding and activation of these membrane-bound receptors. Here, we discuss and present several representative examples of the application of molecular dynamics simulations to the understanding of the signatures of ligand-binding and -biased signaling at the cannabinoid type 1 and 2 receptors.
© 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biased signaling; Cannabinoids; Integral membrane proteins; Ligand binding; Molecular dynamics; Simulations

Mesh:

Substances:

Year:  2017        PMID: 28750815      PMCID: PMC5802876          DOI: 10.1016/bs.mie.2017.05.004

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  89 in total

Review 1.  Fluorescence/bioluminescence resonance energy transfer techniques to study G-protein-coupled receptor activation and signaling.

Authors:  Martin J Lohse; Susanne Nuber; Carsten Hoffmann
Journal:  Pharmacol Rev       Date:  2012-03-08       Impact factor: 25.468

Review 2.  Recent progress in the study of G protein-coupled receptors with molecular dynamics computer simulations.

Authors:  Alan Grossfield
Journal:  Biochim Biophys Acta       Date:  2011-04-03

3.  Small angle x-ray diffraction studies on the topography of cannabinoids in synaptic plasma membranes.

Authors:  T Mavromoustakos; D P Yang; W Broderick; D Fournier; A Makriyannis
Journal:  Pharmacol Biochem Behav       Date:  1991-11       Impact factor: 3.533

Review 4.  GPCR Dynamics: Structures in Motion.

Authors:  Naomi R Latorraca; A J Venkatakrishnan; Ron O Dror
Journal:  Chem Rev       Date:  2016-09-13       Impact factor: 60.622

5.  Automation of the CHARMM General Force Field (CGenFF) II: assignment of bonded parameters and partial atomic charges.

Authors:  K Vanommeslaeghe; E Prabhu Raman; A D MacKerell
Journal:  J Chem Inf Model       Date:  2012-11-28       Impact factor: 4.956

6.  Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1.

Authors:  Jill E Chrencik; Christopher B Roth; Masahiko Terakado; Haruto Kurata; Rie Omi; Yasuyuki Kihara; Dora Warshaviak; Shinji Nakade; Guillermo Asmar-Rovira; Mauro Mileni; Hirotaka Mizuno; Mark T Griffith; Caroline Rodgers; Gye Won Han; Jeffrey Velasquez; Jerold Chun; Raymond C Stevens; Michael A Hanson
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

7.  A role for direct interactions in the modulation of rhodopsin by omega-3 polyunsaturated lipids.

Authors:  Alan Grossfield; Scott E Feller; Michael C Pitman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-17       Impact factor: 11.205

Review 8.  The role of protein dynamics in GPCR function: insights from the β2AR and rhodopsin.

Authors:  Aashish Manglik; Brian Kobilka
Journal:  Curr Opin Cell Biol       Date:  2014-02-17       Impact factor: 8.382

9.  Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Authors:  Søren G F Rasmussen; Brian T DeVree; Yaozhong Zou; Andrew C Kruse; Ka Young Chung; Tong Sun Kobilka; Foon Sun Thian; Pil Seok Chae; Els Pardon; Diane Calinski; Jesper M Mathiesen; Syed T A Shah; Joseph A Lyons; Martin Caffrey; Samuel H Gellman; Jan Steyaert; Georgios Skiniotis; William I Weis; Roger K Sunahara; Brian K Kobilka
Journal:  Nature       Date:  2011-07-19       Impact factor: 49.962

10.  A ligand channel through the G protein coupled receptor opsin.

Authors:  Peter W Hildebrand; Patrick Scheerer; Jung Hee Park; Hui-Woog Choe; Ronny Piechnick; Oliver P Ernst; Klaus Peter Hofmann; Martin Heck
Journal:  PLoS One       Date:  2009-02-05       Impact factor: 3.240

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  2 in total

Review 1.  Cannabinoids, Inner Ear, Hearing, and Tinnitus: A Neuroimmunological Perspective.

Authors:  Paola Perin; Alex Mabou Tagne; Paolo Enrico; Franca Marino; Marco Cosentino; Roberto Pizzala; Cinzia Boselli
Journal:  Front Neurol       Date:  2020-11-23       Impact factor: 4.003

Review 2.  CB1 Cannabinoid Receptor Signaling and Biased Signaling.

Authors:  Luciana M Leo; Mary E Abood
Journal:  Molecules       Date:  2021-09-06       Impact factor: 4.411

  2 in total

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