Literature DB >> 23972146

Heritability of chronic obstructive pulmonary disease and related phenotypes in smokers.

Jin J Zhou1, Michael H Cho, Peter J Castaldi, Craig P Hersh, Edwin K Silverman, Nan M Laird.   

Abstract

RATIONALE: Previous studies of chronic obstructive pulmonary disease (COPD) have suggested that genetic factors play an important role in the development of disease. However, single-nucleotide polymorphisms that are associated with COPD in genome-wide association studies have been shown to account for only a small percentage of the genetic variance in phenotypes of COPD, such as spirometry and imaging variables. These phenotypes are highly predictive of disease, and family studies have shown that spirometric phenotypes are heritable.
OBJECTIVES: To assess the heritability and coheritability of four major COPD-related phenotypes (measurements of FEV1, FEV1/FVC, percent emphysema, and percent gas trapping), and COPD affection status in smokers of non-Hispanic white and African American descent using a population design.
METHODS: Single-nucleotide polymorphisms from genome-wide association studies chips were used to calculate the relatedness of pairs of individuals and a mixed model was adopted to estimate genetic variance and covariance.
MEASUREMENTS AND MAIN RESULTS: In the non-Hispanic whites, estimated heritabilities of FEV1 and FEV1/FVC were both about 37%, consistent with estimates in the literature from family-based studies. For chest computed tomography scan phenotypes, estimated heritabilities were both close to 25%. Heritability of COPD affection status was estimated as 37.7% in both populations.
CONCLUSIONS: This study suggests that a large portion of the genetic risk of COPD is yet to be discovered and gives rationale for additional genetic studies of COPD. The estimates of coheritability (genetic covariance) for pairs of the phenotypes suggest considerable overlap of causal genetic loci.

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Year:  2013        PMID: 23972146      PMCID: PMC3826281          DOI: 10.1164/rccm.201302-0263OC

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN: 1073-449X            Impact factor:   21.405


  28 in total

1.  Heritability of longitudinal change in lung function. The Framingham study.

Authors:  D J Gottlieb; J B Wilk; M Harmon; J C Evans; O Joost; D Levy; G T O'Connor; R H Myers
Journal:  Am J Respir Crit Care Med       Date:  2001-11-01       Impact factor: 21.405

Review 2.  Overview of the pharmacogenomics of cigarette smoking.

Authors:  M K Ho; R F Tyndale
Journal:  Pharmacogenomics J       Date:  2007-01-16       Impact factor: 3.550

3.  PLINK: a tool set for whole-genome association and population-based linkage analyses.

Authors:  Shaun Purcell; Benjamin Neale; Kathe Todd-Brown; Lori Thomas; Manuel A R Ferreira; David Bender; Julian Maller; Pamela Sklar; Paul I W de Bakker; Mark J Daly; Pak C Sham
Journal:  Am J Hum Genet       Date:  2007-07-25       Impact factor: 11.025

4.  Many sequence variants affecting diversity of adult human height.

Authors:  Daniel F Gudbjartsson; G Bragi Walters; Gudmar Thorleifsson; Hreinn Stefansson; Bjarni V Halldorsson; Pasha Zusmanovich; Patrick Sulem; Steinunn Thorlacius; Arnaldur Gylfason; Stacy Steinberg; Anna Helgadottir; Andres Ingason; Valgerdur Steinthorsdottir; Elinborg J Olafsdottir; Gudridur H Olafsdottir; Thorvaldur Jonsson; Knut Borch-Johnsen; Torben Hansen; Gitte Andersen; Torben Jorgensen; Oluf Pedersen; Katja K Aben; J Alfred Witjes; Dorine W Swinkels; Martin den Heijer; Barbara Franke; Andre L M Verbeek; Diane M Becker; Lisa R Yanek; Lewis C Becker; Laufey Tryggvadottir; Thorunn Rafnar; Jeffrey Gulcher; Lambertus A Kiemeney; Augustine Kong; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

5.  Standardization of Spirometry, 1994 Update. American Thoracic Society.

Authors: 
Journal:  Am J Respir Crit Care Med       Date:  1995-09       Impact factor: 21.405

6.  Common SNPs explain a large proportion of the heritability for human height.

Authors:  Jian Yang; Beben Benyamin; Brian P McEvoy; Scott Gordon; Anjali K Henders; Dale R Nyholt; Pamela A Madden; Andrew C Heath; Nicholas G Martin; Grant W Montgomery; Michael E Goddard; Peter M Visscher
Journal:  Nat Genet       Date:  2010-06-20       Impact factor: 38.330

Review 7.  Alpha1-antitrypsin deficiency.

Authors:  James K Stoller; Loutfi S Aboussouan
Journal:  Lancet       Date:  2005 Jun 25-Jul 1       Impact factor: 79.321

8.  Genetic epidemiology of severe, early-onset chronic obstructive pulmonary disease. Risk to relatives for airflow obstruction and chronic bronchitis.

Authors:  E K Silverman; H A Chapman; J M Drazen; S T Weiss; B Rosner; E J Campbell; W J O'DONNELL; J J Reilly; L Ginns; S Mentzer; J Wain; F E Speizer
Journal:  Am J Respir Crit Care Med       Date:  1998-06       Impact factor: 21.405

9.  Identification of ten loci associated with height highlights new biological pathways in human growth.

Authors:  Guillaume Lettre; Anne U Jackson; Christian Gieger; Fredrick R Schumacher; Sonja I Berndt; Serena Sanna; Susana Eyheramendy; Benjamin F Voight; Johannah L Butler; Candace Guiducci; Thomas Illig; Rachel Hackett; Iris M Heid; Kevin B Jacobs; Valeriya Lyssenko; Manuela Uda; Michael Boehnke; Stephen J Chanock; Leif C Groop; Frank B Hu; Bo Isomaa; Peter Kraft; Leena Peltonen; Veikko Salomaa; David Schlessinger; David J Hunter; Richard B Hayes; Gonçalo R Abecasis; H-Erich Wichmann; Karen L Mohlke; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

10.  Genome-wide association analysis identifies 20 loci that influence adult height.

Authors:  Michael N Weedon; Hana Lango; Cecilia M Lindgren; Chris Wallace; David M Evans; Massimo Mangino; Rachel M Freathy; John R B Perry; Suzanne Stevens; Alistair S Hall; Nilesh J Samani; Beverly Shields; Inga Prokopenko; Martin Farrall; Anna Dominiczak; Toby Johnson; Sven Bergmann; Jacques S Beckmann; Peter Vollenweider; Dawn M Waterworth; Vincent Mooser; Colin N A Palmer; Andrew D Morris; Willem H Ouwehand; Jing Hua Zhao; Shengxu Li; Ruth J F Loos; Inês Barroso; Panagiotis Deloukas; Manjinder S Sandhu; Eleanor Wheeler; Nicole Soranzo; Michael Inouye; Nicholas J Wareham; Mark Caulfield; Patricia B Munroe; Andrew T Hattersley; Mark I McCarthy; Timothy M Frayling
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

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  52 in total

1.  Extreme Trait Whole-Genome Sequencing Identifies PTPRO as a Novel Candidate Gene in Emphysema with Severe Airflow Obstruction.

Authors:  Josiah E Radder; Yingze Zhang; Alyssa D Gregory; Shibing Yu; Neil J Kelly; Joseph K Leader; Naftali Kaminski; Frank C Sciurba; Steven D Shapiro
Journal:  Am J Respir Crit Care Med       Date:  2017-07-15       Impact factor: 21.405

2.  A genome-wide association study of chronic obstructive pulmonary disease in Hispanics.

Authors:  Wei Chen; John M Brehm; Ani Manichaikul; Michael H Cho; Nadia Boutaoui; Qi Yan; Kristin M Burkart; Paul L Enright; Jerome I Rotter; Hans Petersen; Shuguang Leng; Ma'en Obeidat; Yohan Bossé; Corry-Anke Brandsma; Ke Hao; Stephen S Rich; Rhea Powell; Lydiana Avila; Manuel Soto-Quiros; Edwin K Silverman; Yohannes Tesfaigzi; R Graham Barr; Juan C Celedón
Journal:  Ann Am Thorac Soc       Date:  2015-03

3.  Telomerase mutations in smokers with severe emphysema.

Authors:  Susan E Stanley; Julian J L Chen; Joshua D Podlevsky; Jonathan K Alder; Nadia N Hansel; Rasika A Mathias; Xiaodong Qi; Nicholas M Rafaels; Robert A Wise; Edwin K Silverman; Kathleen C Barnes; Mary Armanios
Journal:  J Clin Invest       Date:  2014-12-22       Impact factor: 14.808

4.  A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.

Authors:  Michael H Cho; Peter J Castaldi; Craig P Hersh; Brian D Hobbs; R Graham Barr; Ruth Tal-Singer; Per Bakke; Amund Gulsvik; Raúl San José Estépar; Edwin J R Van Beek; Harvey O Coxson; David A Lynch; George R Washko; Nan M Laird; James D Crapo; Terri H Beaty; Edwin K Silverman
Journal:  Am J Respir Crit Care Med       Date:  2015-09-01       Impact factor: 21.405

5.  Variable Susceptibility to Cigarette Smoke-Induced Emphysema in 34 Inbred Strains of Mice Implicates Abi3bp in Emphysema Susceptibility.

Authors:  Josiah E Radder; Alyssa D Gregory; Adriana S Leme; Michael H Cho; Yanxia Chu; Neil J Kelly; Per Bakke; Amund Gulsvik; Augusto A Litonjua; David Sparrow; Terri H Beaty; James D Crapo; Edwin K Silverman; Yingze Zhang; Annerose Berndt; Steven D Shapiro
Journal:  Am J Respir Cell Mol Biol       Date:  2017-09       Impact factor: 6.914

6.  Understanding the role of the chromosome 15q25.1 in COPD through epigenetics and transcriptomics.

Authors:  Ivana Nedeljkovic; Elena Carnero-Montoro; Lies Lahousse; Diana A van der Plaat; Kim de Jong; Judith M Vonk; Cleo C van Diemen; Alen Faiz; Maarten van den Berge; Ma'en Obeidat; Yohan Bossé; David C Nickle; Bios Consortium; Andre G Uitterlinden; Joyce J B van Meurs; Bruno C H Stricker; Guy G Brusselle; Dirkje S Postma; H Marike Boezen; Cornelia M van Duijn; Najaf Amin
Journal:  Eur J Hum Genet       Date:  2018-02-08       Impact factor: 4.246

7.  Whole-Genome Sequencing in Severe Chronic Obstructive Pulmonary Disease.

Authors:  Dmitry Prokopenko; Phuwanat Sakornsakolpat; Heide Loehlein Fier; Dandi Qiao; Margaret M Parker; Merry-Lynn N McDonald; Ani Manichaikul; Stephen S Rich; R Graham Barr; Christopher J Williams; Mark L Brantly; Christoph Lange; Terri H Beaty; James D Crapo; Edwin K Silverman; Michael H Cho
Journal:  Am J Respir Cell Mol Biol       Date:  2018-11       Impact factor: 6.914

8.  Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.

Authors:  Adel Boueiz; Sharon M Lutz; Michael H Cho; Craig P Hersh; Russell P Bowler; George R Washko; Eitan Halper-Stromberg; Per Bakke; Amund Gulsvik; Nan M Laird; Terri H Beaty; Harvey O Coxson; James D Crapo; Edwin K Silverman; Peter J Castaldi; Dawn L DeMeo
Journal:  Am J Respir Crit Care Med       Date:  2017-03-15       Impact factor: 21.405

9.  Exome Sequencing Analysis in Severe, Early-Onset Chronic Obstructive Pulmonary Disease.

Authors:  Dandi Qiao; Christoph Lange; Terri H Beaty; James D Crapo; Kathleen C Barnes; Michael Bamshad; Craig P Hersh; Jarrett Morrow; Victor M Pinto-Plata; Nathaniel Marchetti; Raphael Bueno; Bartolome R Celli; Gerald J Criner; Edwin K Silverman; Michael H Cho
Journal:  Am J Respir Crit Care Med       Date:  2016-06-15       Impact factor: 21.405

10.  Exome Array Analysis Identifies a Common Variant in IL27 Associated with Chronic Obstructive Pulmonary Disease.

Authors:  Brian D Hobbs; Margaret M Parker; Han Chen; Taotao Lao; Megan Hardin; Dandi Qiao; Iwona Hawrylkiewicz; Pawel Sliwinski; Jae-Joon Yim; Woo Jin Kim; Deog Kyeom Kim; Peter J Castaldi; Craig P Hersh; Jarrett Morrow; Bartolome R Celli; Victor M Pinto-Plata; Gerald J Criner; Nathaniel Marchetti; Raphael Bueno; Alvar Agustí; Barry J Make; James D Crapo; Peter M Calverley; Claudio F Donner; David A Lomas; Emiel F M Wouters; Jorgen Vestbo; Peter D Paré; Robert D Levy; Stephen I Rennard; Xiaobo Zhou; Nan M Laird; Xihong Lin; Terri H Beaty; Edwin K Silverman; Michael H Cho
Journal:  Am J Respir Crit Care Med       Date:  2016-07-01       Impact factor: 21.405

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