Literature DB >> 18391952

Genome-wide association analysis identifies 20 loci that influence adult height.

Michael N Weedon1, Hana Lango, Cecilia M Lindgren, Chris Wallace, David M Evans, Massimo Mangino, Rachel M Freathy, John R B Perry, Suzanne Stevens, Alistair S Hall, Nilesh J Samani, Beverly Shields, Inga Prokopenko, Martin Farrall, Anna Dominiczak, Toby Johnson, Sven Bergmann, Jacques S Beckmann, Peter Vollenweider, Dawn M Waterworth, Vincent Mooser, Colin N A Palmer, Andrew D Morris, Willem H Ouwehand, Jing Hua Zhao, Shengxu Li, Ruth J F Loos, Inês Barroso, Panagiotis Deloukas, Manjinder S Sandhu, Eleanor Wheeler, Nicole Soranzo, Michael Inouye, Nicholas J Wareham, Mark Caulfield, Patricia B Munroe, Andrew T Hattersley, Mark I McCarthy, Timothy M Frayling.   

Abstract

Adult height is a model polygenic trait, but there has been limited success in identifying the genes underlying its normal variation. To identify genetic variants influencing adult human height, we used genome-wide association data from 13,665 individuals and genotyped 39 variants in an additional 16,482 samples. We identified 20 variants associated with adult height (P < 5 x 10(-7), with 10 reaching P < 1 x 10(-10)). Combined, the 20 SNPs explain approximately 3% of height variation, with a approximately 5 cm difference between the 6.2% of people with 17 or fewer 'tall' alleles compared to the 5.5% with 27 or more 'tall' alleles. The loci we identified implicate genes in Hedgehog signaling (IHH, HHIP, PTCH1), extracellular matrix (EFEMP1, ADAMTSL3, ACAN) and cancer (CDK6, HMGA2, DLEU7) pathways, and provide new insights into human growth and developmental processes. Finally, our results provide insights into the genetic architecture of a classic quantitative trait.

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Year:  2008        PMID: 18391952      PMCID: PMC2681221          DOI: 10.1038/ng.121

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  25 in total

1.  Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease.

Authors:  Kirk E Lohmueller; Celeste L Pearce; Malcolm Pike; Eric S Lander; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2003-01-13       Impact factor: 38.330

2.  Assessing the impact of population stratification on genetic association studies.

Authors:  Matthew L Freedman; David Reich; Kathryn L Penney; Gavin J McDonald; Andre A Mignault; Nick Patterson; Stacey B Gabriel; Eric J Topol; Jordan W Smoller; Carlos N Pato; Michele T Pato; Tracey L Petryshen; Laurence N Kolonel; Eric S Lander; Pamela Sklar; Brian Henderson; Joel N Hirschhorn; David Altshuler
Journal:  Nat Genet       Date:  2004-03-28       Impact factor: 38.330

3.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

Review 4.  The genetic contribution to stature.

Authors:  M A Preece
Journal:  Horm Res       Date:  1996

5.  Relative effect of genetic and environmental factors on body height: differences across birth cohorts among Finnish men and women.

Authors:  K Silventoinen; J Kaprio; E Lahelma; M Koskenvuo
Journal:  Am J Public Health       Date:  2000-04       Impact factor: 9.308

6.  Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.

Authors:  Richa Saxena; Benjamin F Voight; Valeriya Lyssenko; Noël P Burtt; Paul I W de Bakker; Hong Chen; Jeffrey J Roix; Sekar Kathiresan; Joel N Hirschhorn; Mark J Daly; Thomas E Hughes; Leif Groop; David Altshuler; Peter Almgren; Jose C Florez; Joanne Meyer; Kristin Ardlie; Kristina Bengtsson Boström; Bo Isomaa; Guillaume Lettre; Ulf Lindblad; Helen N Lyon; Olle Melander; Christopher Newton-Cheh; Peter Nilsson; Marju Orho-Melander; Lennart Råstam; Elizabeth K Speliotes; Marja-Riitta Taskinen; Tiinamaija Tuomi; Candace Guiducci; Anna Berglund; Joyce Carlson; Lauren Gianniny; Rachel Hackett; Liselotte Hall; Johan Holmkvist; Esa Laurila; Marketa Sjögren; Maria Sterner; Aarti Surti; Margareta Svensson; Malin Svensson; Ryan Tewhey; Brendan Blumenstiel; Melissa Parkin; Matthew Defelice; Rachel Barry; Wendy Brodeur; Jody Camarata; Nancy Chia; Mary Fava; John Gibbons; Bob Handsaker; Claire Healy; Kieu Nguyen; Casey Gates; Carrie Sougnez; Diane Gage; Marcia Nizzari; Stacey B Gabriel; Gung-Wei Chirn; Qicheng Ma; Hemang Parikh; Delwood Richardson; Darrell Ricke; Shaun Purcell
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

7.  Genome-wide mapping of human loci for essential hypertension.

Authors:  Mark Caulfield; Patricia Munroe; Janine Pembroke; Nilesh Samani; Anna Dominiczak; Morris Brown; Nigel Benjamin; John Webster; Peter Ratcliffe; Suzanne O'Shea; Jeanette Papp; Elizabeth Taylor; Richard Dobson; Joanne Knight; Stephen Newhouse; Joel Hooper; Wai Lee; Nick Brain; David Clayton; G Mark Lathrop; Martin Farrall; John Connell
Journal:  Lancet       Date:  2003-06-21       Impact factor: 79.321

8.  Identification of ten loci associated with height highlights new biological pathways in human growth.

Authors:  Guillaume Lettre; Anne U Jackson; Christian Gieger; Fredrick R Schumacher; Sonja I Berndt; Serena Sanna; Susana Eyheramendy; Benjamin F Voight; Johannah L Butler; Candace Guiducci; Thomas Illig; Rachel Hackett; Iris M Heid; Kevin B Jacobs; Valeriya Lyssenko; Manuela Uda; Michael Boehnke; Stephen J Chanock; Leif C Groop; Frank B Hu; Bo Isomaa; Peter Kraft; Leena Peltonen; Veikko Salomaa; David Schlessinger; David J Hunter; Richard B Hayes; Gonçalo R Abecasis; H-Erich Wichmann; Karen L Mohlke; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

9.  Combined genome scans for body stature in 6,602 European twins: evidence for common Caucasian loci.

Authors:  Markus Perola; Sampo Sammalisto; Tero Hiekkalinna; Nick G Martin; Peter M Visscher; Grant W Montgomery; Beben Benyamin; Jennifer R Harris; Dorret Boomsma; Gonneke Willemsen; Jouke-Jan Hottenga; Kaare Christensen; Kirsten Ohm Kyvik; Thorkild I A Sørensen; Nancy L Pedersen; Patrik K E Magnusson; Tim D Spector; Elisabeth Widen; Karri Silventoinen; Jaakko Kaprio; Aarno Palotie; Leena Peltonen
Journal:  PLoS Genet       Date:  2007-05-02       Impact factor: 5.917

10.  LDL-cholesterol concentrations: a genome-wide association study.

Authors:  Manjinder S Sandhu; Dawn M Waterworth; Sally L Debenham; Eleanor Wheeler; Konstantinos Papadakis; Jing Hua Zhao; Kijoung Song; Xin Yuan; Toby Johnson; Sofie Ashford; Michael Inouye; Robert Luben; Matthew Sims; David Hadley; Wendy McArdle; Philip Barter; Y Antero Kesäniemi; Robert W Mahley; Ruth McPherson; Scott M Grundy; Sheila A Bingham; Kay-Tee Khaw; Ruth J F Loos; Gérard Waeber; Inês Barroso; David P Strachan; Panagiotis Deloukas; Peter Vollenweider; Nicholas J Wareham; Vincent Mooser
Journal:  Lancet       Date:  2008-02-09       Impact factor: 79.321

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  370 in total

1.  Replication in genome-wide association studies.

Authors:  Peter Kraft; Eleftheria Zeggini; John P A Ioannidis
Journal:  Stat Sci       Date:  2009-11-01       Impact factor: 2.901

2.  Identification of a chronic obstructive pulmonary disease genetic determinant that regulates HHIP.

Authors:  Xiaobo Zhou; Rebecca M Baron; Megan Hardin; Michael H Cho; Jan Zielinski; Iwona Hawrylkiewicz; Pawel Sliwinski; Craig P Hersh; John D Mancini; Ke Lu; Derek Thibault; Amy L Donahue; Barbara J Klanderman; Bernard Rosner; Benjamin A Raby; Quan Lu; Adriana M Geldart; Matthew D Layne; Mark A Perrella; Scott T Weiss; Augustine M K Choi; Edwin K Silverman
Journal:  Hum Mol Genet       Date:  2011-12-02       Impact factor: 6.150

3.  What is a functional locus? Understanding the genetic basis of complex phenotypic traits.

Authors:  Edward A Ruiz-Narváez
Journal:  Med Hypotheses       Date:  2011-02-01       Impact factor: 1.538

4.  On the meta-analysis of genome-wide association studies: a robust and efficient approach to combine population and family-based studies.

Authors:  Sungho Won; Qing Lu; Lars Bertram; Rudolph E Tanzi; Christoph Lange
Journal:  Hum Hered       Date:  2012-01-18       Impact factor: 0.444

5.  The latest news from the GENOMOS study.

Authors:  André G Uitterlinden
Journal:  Clin Cases Miner Bone Metab       Date:  2009-01

Review 6.  Genome-wide approaches to schizophrenia.

Authors:  Jubao Duan; Alan R Sanders; Pablo V Gejman
Journal:  Brain Res Bull       Date:  2010-04-28       Impact factor: 4.077

7.  Genome-wide association of anthropometric traits in African- and African-derived populations.

Authors:  Sun J Kang; Charleston W K Chiang; Cameron D Palmer; Bamidele O Tayo; Guillaume Lettre; Johannah L Butler; Rachel Hackett; Adebowale A Adeyemo; Candace Guiducci; Ilze Berzins; Thutrang T Nguyen; Tao Feng; Amy Luke; Daniel Shriner; Kristin Ardlie; Charles Rotimi; Rainford Wilks; Terrence Forrester; Colin A McKenzie; Helen N Lyon; Richard S Cooper; Xiaofeng Zhu; Joel N Hirschhorn
Journal:  Hum Mol Genet       Date:  2010-04-16       Impact factor: 6.150

8.  The regulation-of-autophagy pathway may influence Chinese stature variation: evidence from elder adults.

Authors:  Feng Pan; Xiao-Gang Liu; Yan-Fang Guo; Yuan Chen; Shan-Shan Dong; Chuan Qiu; Zhi-Xin Zhang; Qi Zhou; Tie-Lin Yang; Yan Guo; Xue-Zhen Zhu; Hong-Wen Deng
Journal:  J Hum Genet       Date:  2010-05-07       Impact factor: 3.172

9.  Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.

Authors:  Jason D Boardman; Benjamin W Domingue; Casey L Blalock; Brett C Haberstick; Kathleen Mullan Harris; Matthew B McQueen
Journal:  Demography       Date:  2014-02

Review 10.  HMGA2, microRNAs, and stem cell aging.

Authors:  Scott M Hammond; Norman E Sharpless
Journal:  Cell       Date:  2008-12-12       Impact factor: 41.582

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