Literature DB >> 23970346

Visualizing cellular machines with colocalization single molecule microscopy.

Joshua D Larson1, Margaret L Rodgers, Aaron A Hoskins.   

Abstract

Many of the cell's macromolecular machines contain multiple components that transiently associate with one another. This compositional and dynamic complexity presents a challenge for understanding how these machines are constructed and function. Colocalization single molecule spectroscopy enables simultaneous observation of individual components of these machines in real-time and grants a unique window into processes that are typically obscured in ensemble assays. Colocalization experiments can yield valuable information about assembly pathways, compositional heterogeneity, and kinetics that together contribute to the development of richly detailed reaction mechanisms. This review focuses on recent advances in colocalization single molecule spectroscopy and how this technique has been applied to enhance our understanding of transcription, RNA splicing, and translation.

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Year:  2013        PMID: 23970346      PMCID: PMC3946777          DOI: 10.1039/c3cs60208g

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  58 in total

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Authors:  M Kozak
Journal:  Gene       Date:  1999-07-08       Impact factor: 3.688

2.  Zero-mode waveguides for single-molecule analysis at high concentrations.

Authors:  M J Levene; J Korlach; S W Turner; M Foquet; H G Craighead; W W Webb
Journal:  Science       Date:  2003-01-31       Impact factor: 47.728

3.  Subnanometre single-molecule localization, registration and distance measurements.

Authors:  Alexandros Pertsinidis; Yunxiang Zhang; Steven Chu
Journal:  Nature       Date:  2010-07-07       Impact factor: 49.962

4.  Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.

Authors:  Bianca Sclavi; Evgeny Zaychikov; Anastasia Rogozina; Ferdinand Walther; Malcolm Buckle; Hermann Heumann
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

5.  In vivo protein labeling with trimethoprim conjugates: a flexible chemical tag.

Authors:  Lawrence W Miller; Yunfei Cai; Michael P Sheetz; Virginia W Cornish
Journal:  Nat Methods       Date:  2005-04       Impact factor: 28.547

Review 6.  Structure-function insights into prokaryotic and eukaryotic translation initiation.

Authors:  Alexander G Myasnikov; Angelita Simonetti; Stefano Marzi; Bruno P Klaholz
Journal:  Curr Opin Struct Biol       Date:  2009-06-01       Impact factor: 6.809

7.  Probing single biomolecules in solution using the anti-Brownian electrokinetic (ABEL) trap.

Authors:  Quan Wang; Randall H Goldsmith; Yan Jiang; Samuel D Bockenhauer; W E Moerner
Journal:  Acc Chem Res       Date:  2012-05-22       Impact factor: 22.384

8.  Ordered and dynamic assembly of single spliceosomes.

Authors:  Aaron A Hoskins; Larry J Friedman; Sarah S Gallagher; Daniel J Crawford; Eric G Anderson; Richard Wombacher; Nicholas Ramirez; Virginia W Cornish; Jeff Gelles; Melissa J Moore
Journal:  Science       Date:  2011-03-11       Impact factor: 47.728

9.  Single-cell systems biology by super-resolution imaging and combinatorial labeling.

Authors:  Eric Lubeck; Long Cai
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

10.  A single-molecule assay for telomerase structure-function analysis.

Authors:  John Y Wu; Michael D Stone; Xiaowei Zhuang
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

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  10 in total

Review 1.  smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding.

Authors:  Colin D Kinz-Thompson; Ruben L Gonzalez
Journal:  FEBS Lett       Date:  2014-07-24       Impact factor: 4.124

Review 2.  Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope.

Authors:  Ameya P Jalihal; Paul E Lund; Nils G Walter
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

3.  Kinetics coming into focus: single-molecule microscopy of riboswitch dynamics.

Authors:  Sujay Ray; Adrien Chauvier; Nils G Walter
Journal:  RNA Biol       Date:  2018-10-29       Impact factor: 4.652

4.  Multiparametric high-resolution imaging of native proteins by force-distance curve-based AFM.

Authors:  Moritz Pfreundschuh; David Martinez-Martin; Estefania Mulvihill; Susanne Wegmann; Daniel J Muller
Journal:  Nat Protoc       Date:  2014-04-17       Impact factor: 13.491

Review 5.  Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.

Authors:  Sujay Ray; Julia R Widom; Nils G Walter
Journal:  Chem Rev       Date:  2018-01-24       Impact factor: 60.622

6.  Design and construction of a multiwavelength, micromirror total internal reflectance fluorescence microscope.

Authors:  Joshua Larson; Matt Kirk; Eric A Drier; William O'Brien; James F MacKay; Larry J Friedman; Aaron A Hoskins
Journal:  Nat Protoc       Date:  2014-09-04       Impact factor: 13.491

7.  Analysis of spliceosome dynamics by maximum likelihood fitting of dwell time distributions.

Authors:  Harpreet Kaur; Fatemehsadat Jamalidinan; Samson G F Condon; Alessandro Senes; Aaron A Hoskins
Journal:  Methods       Date:  2018-11-23       Impact factor: 3.608

Review 8.  Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors:  Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-20       Impact factor: 9.957

9.  Single molecule analysis reveals reversible and irreversible steps during spliceosome activation.

Authors:  Aaron A Hoskins; Margaret L Rodgers; Larry J Friedman; Jeff Gelles; Melissa J Moore
Journal:  Elife       Date:  2016-05-31       Impact factor: 8.140

10.  Crosstalk between CST and RPA regulates RAD51 activity during replication stress.

Authors:  Kai-Hang Lei; Han-Lin Yang; Hao-Yen Chang; Hsin-Yi Yeh; Dinh Duc Nguyen; Tzu-Yu Lee; Xinxing Lyu; Megan Chastain; Weihang Chai; Hung-Wen Li; Peter Chi
Journal:  Nat Commun       Date:  2021-11-05       Impact factor: 14.919

  10 in total

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