Literature DB >> 19493673

Structure-function insights into prokaryotic and eukaryotic translation initiation.

Alexander G Myasnikov1, Angelita Simonetti, Stefano Marzi, Bruno P Klaholz.   

Abstract

Translation initiation is the rate-limiting and most complexly regulated step of protein synthesis in prokaryotes and eukaryotes. In the last few years, cryo-electron microscopy has provided several novel insights into the universal process of translation initiation. Structures of prokaryotic 30S and 70S ribosomal initiation complexes with initiator transfer RNA (tRNA), messenger RNA (mRNA), and initiation factors have recently revealed the mechanism of initiator tRNA recruitment to the assembling ribosomal machinery, involving molecular rearrangements of the ribosome and associated factors. First three-dimensional pictures of the particularly complex eukaryotic translation initiation machinery have been obtained, revealing how initiation factors tune the ribosome for recruiting the mRNA. A comparison of the available prokaryotic and eukaryotic structures shows that--besides significant differences--some key ribosomal features are universally conserved.

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Year:  2009        PMID: 19493673     DOI: 10.1016/j.sbi.2009.04.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

1.  Dynamic evolution of translation initiation mechanisms in prokaryotes.

Authors:  So Nakagawa; Yoshihito Niimura; Kin-ichiro Miura; Takashi Gojobori
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

Review 2.  Translation initiation: variations in the mechanism can be anticipated.

Authors:  Naglis Malys; John E G McCarthy
Journal:  Cell Mol Life Sci       Date:  2010-11-13       Impact factor: 9.261

3.  Decoding the Function of Expansion Segments in Ribosomes.

Authors:  Kotaro Fujii; Teodorus Theo Susanto; Saumya Saurabh; Maria Barna
Journal:  Mol Cell       Date:  2018-12-20       Impact factor: 17.970

4.  Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Authors:  Joana Pinto Vieira; Julien Racle; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 5.  Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states.

Authors:  Anton A Komar; Maria Hatzoglou
Journal:  Cell Cycle       Date:  2011-01-15       Impact factor: 4.534

6.  In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state.

Authors:  Jennifer L McGinnis; Qi Liu; Christopher A Lavender; Aishwarya Devaraj; Sean P McClory; Kurt Fredrick; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

7.  Crystal Structure of the C-terminal Domain of Human eIF2D and Its Implications on Eukaryotic Translation Initiation.

Authors:  Anand T Vaidya; Ivan B Lomakin; Newlyn N Joseph; Sergey E Dmitriev; Thomas A Steitz
Journal:  J Mol Biol       Date:  2017-07-21       Impact factor: 5.469

8.  Engineering ribosomal leaky scanning and upstream open reading frames for precise control of protein translation.

Authors:  Joshua P Ferreira; William L Noderer; Alexander J Diaz de Arce; Clifford L Wang
Journal:  Bioengineered       Date:  2014-01-14       Impact factor: 3.269

Review 9.  In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis.

Authors:  Corey E Perez; Ruben L Gonzalez
Journal:  Curr Opin Chem Biol       Date:  2011-11-19       Impact factor: 8.822

10.  Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes.

Authors:  So Nakagawa; Yoshihito Niimura; Takashi Gojobori
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

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