Literature DB >> 23968564

Refactoring the silent spectinabilin gene cluster using a plug-and-play scaffold.

Zengyi Shao1, Guodong Rao, Chun Li, Zhanar Abil, Yunzi Luo, Huimin Zhao.   

Abstract

Natural products (secondary metabolites) are a rich source of compounds with important biological activities. Eliciting pathway expression is always challenging but extremely important in natural product discovery because an individual pathway is tightly controlled through a unique regulation mechanism and hence often remains silent under the routine culturing conditions. To overcome the drawbacks of the traditional approaches that lack general applicability, we developed a simple synthetic biology approach that decouples pathway expression from complex native regulations. Briefly, the entire silent biosynthetic pathway is refactored using a plug-and-play scaffold and a set of heterologous promoters that are functional in a heterologous host under the target culturing condition. Using this strategy, we successfully awakened the silent spectinabilin pathway from Streptomyces orinoci. This strategy bypasses the traditional laborious processes to elicit pathway expression and represents a new platform for discovering novel natural products.

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Year:  2013        PMID: 23968564      PMCID: PMC4326240          DOI: 10.1021/sb400058n

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  55 in total

1.  Hyper-inducible expression system for streptomycetes.

Authors:  Sachio Herai; Yoshiteru Hashimoto; Hiroki Higashibata; Hideaki Maseda; Haruo Ikeda; Satoshi Omura; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-17       Impact factor: 11.205

2.  Yeast transformation by the LiAc/SS Carrier DNA/PEG method.

Authors:  R Daniel Gietz; Robin A Woods
Journal:  Methods Mol Biol       Date:  2006

Review 3.  Bioactive compounds from cyanobacteria and microalgae: an overview.

Authors:  Sawraj Singh; Bhushan N Kate; U C Banerjee
Journal:  Crit Rev Biotechnol       Date:  2005 Jul-Sep       Impact factor: 8.429

Review 4.  Regulation of secondary metabolism in streptomycetes.

Authors:  Mervyn J Bibb
Journal:  Curr Opin Microbiol       Date:  2005-04       Impact factor: 7.934

Review 5.  Analysis of myxobacterial secondary metabolism goes molecular.

Authors:  Helge B Bode; Rolf Müller
Journal:  J Ind Microbiol Biotechnol       Date:  2006-02-21       Impact factor: 3.346

6.  Cloning, sequencing, analysis, and heterologous expression of the fredericamycin biosynthetic gene cluster from Streptomyces griseus.

Authors:  Evelyn Wendt-Pienkowski; Yong Huang; Jian Zhang; Bensheng Li; Hao Jiang; Hyungjin Kwon; C Richard Hutchinson; Ben Shen
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

7.  Characterization and gene expression of Babesia bovis elongation factor-1alpha.

Authors:  Carlos E Suarez; Junzo Norimine; Paul Lacy; Terry F McElwain
Journal:  Int J Parasitol       Date:  2006-03-29       Impact factor: 3.981

8.  Potent in vitro antimalarial activity of metacycloprodigiosin isolated from Streptomyces spectabilis BCC 4785.

Authors:  Masahiko Isaka; Amonlaya Jaturapat; Jarin Kramyu; Morakot Tanticharoen; Yodhathai Thebtaranonth
Journal:  Antimicrob Agents Chemother       Date:  2002-04       Impact factor: 5.191

9.  Increasing the efficiency of heterologous promoters in actinomycetes.

Authors:  Christopher J Wilkinson; Zoë A Hughes-Thomas; Christine J Martin; Ines Böhm; Tatiana Mironenko; Matthew Deacon; Michael Wheatcroft; Gabriele Wirtz; James Staunton; Peter F Leadlay
Journal:  J Mol Microbiol Biotechnol       Date:  2002-07

10.  Promoter constructions for efficient secretion expression in Streptomyces lividans.

Authors:  T Schmitt-John; J W Engels
Journal:  Appl Microbiol Biotechnol       Date:  1992-01       Impact factor: 4.813

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  55 in total

Review 1.  Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

Review 2.  Culture-independent discovery of natural products from soil metagenomes.

Authors:  Micah Katz; Bradley M Hover; Sean F Brady
Journal:  J Ind Microbiol Biotechnol       Date:  2015-11-19       Impact factor: 3.346

3.  Atolypenes, Tricyclic Bacterial Sesterterpenes Discovered Using a Multiplexed In Vitro Cas9-TAR Gene Cluster Refactoring Approach.

Authors:  Seong-Hwan Kim; Wanli Lu; Mahmoud Kamal Ahmadi; Daniel Montiel; Melinda A Ternei; Sean F Brady
Journal:  ACS Synth Biol       Date:  2018-12-21       Impact factor: 5.110

4.  Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters.

Authors:  Daniel Montiel; Hahk-Soo Kang; Fang-Yuan Chang; Zachary Charlop-Powers; Sean F Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

5.  Modular and Integrative Vectors for Synthetic Biology Applications in Streptomyces spp.

Authors:  Céline Aubry; Jean-Luc Pernodet; Sylvie Lautru
Journal:  Appl Environ Microbiol       Date:  2019-08-01       Impact factor: 4.792

Review 6.  Recent advances in natural product discovery.

Authors:  Yunzi Luo; Ryan E Cobb; Huimin Zhao
Journal:  Curr Opin Biotechnol       Date:  2014-09-26       Impact factor: 9.740

Review 7.  Directed evolution combined with synthetic biology strategies expedite semi-rational engineering of genes and genomes.

Authors:  Zhen Kang; Junli Zhang; Peng Jin; Sen Yang
Journal:  Bioengineered       Date:  2015-01-26       Impact factor: 3.269

Review 8.  The re-emergence of natural products for drug discovery in the genomics era.

Authors:  Alan L Harvey; RuAngelie Edrada-Ebel; Ronald J Quinn
Journal:  Nat Rev Drug Discov       Date:  2015-01-23       Impact factor: 84.694

9.  Multiplexed CRISPR/Cas9- and TAR-Mediated Promoter Engineering of Natural Product Biosynthetic Gene Clusters in Yeast.

Authors:  Hahk-Soo Kang; Zachary Charlop-Powers; Sean F Brady
Journal:  ACS Synth Biol       Date:  2016-06-10       Impact factor: 5.110

10.  Minimum Information about a Biosynthetic Gene cluster.

Authors:  Marnix H Medema; Renzo Kottmann; Pelin Yilmaz; Matthew Cummings; John B Biggins; Kai Blin; Irene de Bruijn; Yit Heng Chooi; Jan Claesen; R Cameron Coates; Pablo Cruz-Morales; Srikanth Duddela; Stephanie Düsterhus; Daniel J Edwards; David P Fewer; Neha Garg; Christoph Geiger; Juan Pablo Gomez-Escribano; Anja Greule; Michalis Hadjithomas; Anthony S Haines; Eric J N Helfrich; Matthew L Hillwig; Keishi Ishida; Adam C Jones; Carla S Jones; Katrin Jungmann; Carsten Kegler; Hyun Uk Kim; Peter Kötter; Daniel Krug; Joleen Masschelein; Alexey V Melnik; Simone M Mantovani; Emily A Monroe; Marcus Moore; Nathan Moss; Hans-Wilhelm Nützmann; Guohui Pan; Amrita Pati; Daniel Petras; F Jerry Reen; Federico Rosconi; Zhe Rui; Zhenhua Tian; Nicholas J Tobias; Yuta Tsunematsu; Philipp Wiemann; Elizabeth Wyckoff; Xiaohui Yan; Grace Yim; Fengan Yu; Yunchang Xie; Bertrand Aigle; Alexander K Apel; Carl J Balibar; Emily P Balskus; Francisco Barona-Gómez; Andreas Bechthold; Helge B Bode; Rainer Borriss; Sean F Brady; Axel A Brakhage; Patrick Caffrey; Yi-Qiang Cheng; Jon Clardy; Russell J Cox; René De Mot; Stefano Donadio; Mohamed S Donia; Wilfred A van der Donk; Pieter C Dorrestein; Sean Doyle; Arnold J M Driessen; Monika Ehling-Schulz; Karl-Dieter Entian; Michael A Fischbach; Lena Gerwick; William H Gerwick; Harald Gross; Bertolt Gust; Christian Hertweck; Monica Höfte; Susan E Jensen; Jianhua Ju; Leonard Katz; Leonard Kaysser; Jonathan L Klassen; Nancy P Keller; Jan Kormanec; Oscar P Kuipers; Tomohisa Kuzuyama; Nikos C Kyrpides; Hyung-Jin Kwon; Sylvie Lautru; Rob Lavigne; Chia Y Lee; Bai Linquan; Xinyu Liu; Wen Liu; Andriy Luzhetskyy; Taifo Mahmud; Yvonne Mast; Carmen Méndez; Mikko Metsä-Ketelä; Jason Micklefield; Douglas A Mitchell; Bradley S Moore; Leonilde M Moreira; Rolf Müller; Brett A Neilan; Markus Nett; Jens Nielsen; Fergal O'Gara; Hideaki Oikawa; Anne Osbourn; Marcia S Osburne; Bohdan Ostash; Shelley M Payne; Jean-Luc Pernodet; Miroslav Petricek; Jörn Piel; Olivier Ploux; Jos M Raaijmakers; José A Salas; Esther K Schmitt; Barry Scott; Ryan F Seipke; Ben Shen; David H Sherman; Kaarina Sivonen; Michael J Smanski; Margherita Sosio; Evi Stegmann; Roderich D Süssmuth; Kapil Tahlan; Christopher M Thomas; Yi Tang; Andrew W Truman; Muriel Viaud; Jonathan D Walton; Christopher T Walsh; Tilmann Weber; Gilles P van Wezel; Barrie Wilkinson; Joanne M Willey; Wolfgang Wohlleben; Gerard D Wright; Nadine Ziemert; Changsheng Zhang; Sergey B Zotchev; Rainer Breitling; Eriko Takano; Frank Oliver Glöckner
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

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