Literature DB >> 25614221

The re-emergence of natural products for drug discovery in the genomics era.

Alan L Harvey1, RuAngelie Edrada-Ebel2, Ronald J Quinn3.   

Abstract

Natural products have been a rich source of compounds for drug discovery. However, their use has diminished in the past two decades, in part because of technical barriers to screening natural products in high-throughput assays against molecular targets. Here, we review strategies for natural product screening that harness the recent technical advances that have reduced these barriers. We also assess the use of genomic and metabolomic approaches to augment traditional methods of studying natural products, and highlight recent examples of natural products in antimicrobial drug discovery and as inhibitors of protein-protein interactions. The growing appreciation of functional assays and phenotypic screens may further contribute to a revival of interest in natural products for drug discovery.

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Year:  2015        PMID: 25614221     DOI: 10.1038/nrd4510

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  289 in total

1.  Property distributions: differences between drugs, natural products, and molecules from combinatorial chemistry.

Authors:  Miklos Feher; Jonathan M Schmidt
Journal:  J Chem Inf Comput Sci       Date:  2003 Jan-Feb

2.  Structure validation of natural products by quantum-mechanical GIAO calculations of 13C NMR chemical shifts.

Authors:  Giampaolo Barone; Luigi Gomez-Paloma; Dario Duca; Arturo Silvestri; Raffaele Riccio; Giuseppe Bifulco
Journal:  Chemistry       Date:  2002-07-15       Impact factor: 5.236

3.  Genetic evidence supports secondary metabolic diversity in Prochloron spp., the cyanobacterial symbiont of a tropical ascidian.

Authors:  Eric W Schmidt; Sebastian Sudek; Margo G Haygood
Journal:  J Nat Prod       Date:  2004-08       Impact factor: 4.050

4.  Natural products isolation in modern drug discovery programs.

Authors:  Alexander I Gray; John O Igoli; Ruangelie Edrada-Ebel
Journal:  Methods Mol Biol       Date:  2012

Review 5.  Fungal metabolite analysis in genomics and phenomics.

Authors:  Michael C Jewett; Gerald Hofmann; Jens Nielsen
Journal:  Curr Opin Biotechnol       Date:  2006-02-20       Impact factor: 9.740

6.  Enhancement of antibiotic and secondary metabolite detection from filamentous fungi by growth on nutritional arrays.

Authors:  G F Bills; G Platas; A Fillola; M R Jiménez; J Collado; F Vicente; J Martín; A González; J Bur-Zimmermann; J R Tormo; F Peláez
Journal:  J Appl Microbiol       Date:  2008-02-19       Impact factor: 3.772

Review 7.  The influence of lead discovery strategies on the properties of drug candidates.

Authors:  György M Keserü; Gergely M Makara
Journal:  Nat Rev Drug Discov       Date:  2009-03       Impact factor: 84.694

Review 8.  Challenges of antibacterial discovery.

Authors:  Lynn L Silver
Journal:  Clin Microbiol Rev       Date:  2011-01       Impact factor: 26.132

Review 9.  Discovery, biosynthesis, and rational engineering of novel enterocin and wailupemycin polyketide analogues.

Authors:  John A Kalaitzis
Journal:  Methods Mol Biol       Date:  2013

Review 10.  Yondelis (trabectedin, ET-743): the development of an anticancer agent of marine origin.

Authors:  Ch van Kesteren; M M M de Vooght; L López-Lázaro; R A A Mathôt; J H M Schellens; J M Jimeno; J H Beijnen
Journal:  Anticancer Drugs       Date:  2003-08       Impact factor: 2.248

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  492 in total

Review 1.  Discovery of novel drug targets and their functions using phenotypic screening of natural products.

Authors:  Junghwa Chang; Ho Jeong Kwon
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

Review 2.  Cancer drug development: The missing links.

Authors:  Ajaikumar B Kunnumakkara; Devivasha Bordoloi; Bethsebie Lalduhsaki Sailo; Nand Kishor Roy; Krishan Kumar Thakur; Kishore Banik; Mehdi Shakibaei; Subash C Gupta; Bharat B Aggarwal
Journal:  Exp Biol Med (Maywood)       Date:  2019-04-08

3.  Chemical encoding of risk perception and predator detection among estuarine invertebrates.

Authors:  Remington X Poulin; Serge Lavoie; Katherine Siegel; David A Gaul; Marc J Weissburg; Julia Kubanek
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-08       Impact factor: 11.205

4.  A Carbene Catalysis Strategy for the Synthesis of Protoilludane Natural Products.

Authors:  M Todd Hovey; Daniel T Cohen; Daniel M Walden; Paul H-Y Cheong; Karl A Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2017-07-17       Impact factor: 15.336

5.  Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil.

Authors:  Touraj Rahimi; Ali Niazi; Tahereh Deihimi; Seyed Mohsen Taghavi; Shahab Ayatollahi; Esmaeil Ebrahimie
Journal:  Funct Integr Genomics       Date:  2018-05-05       Impact factor: 3.410

6.  A click chemistry assay to identify natural product ligands for pre-microRNAs.

Authors:  Amanda L Garner; Daniel A Lorenz; Erin E Gallagher
Journal:  Methods Enzymol       Date:  2019-05-11       Impact factor: 1.600

7.  Genomics Approach of the Natural Product Pharmacology for High Impact Diseases.

Authors:  Yong Wang; Qin Feng; Peijian He; Lixin Zhu; Guoxun Chen
Journal:  Int J Genomics       Date:  2018-04-08       Impact factor: 2.326

8.  Isolation and anti-HIV-1 integrase activity of lentzeosides A-F from extremotolerant lentzea sp. H45, a strain isolated from a high-altitude Atacama Desert soil.

Authors:  Dominik Wichner; Hamidah Idris; Wael E Houssen; Andrew R McEwan; Alan T Bull; Juan A Asenjo; Michael Goodfellow; Marcel Jaspars; Rainer Ebel; Mostafa E Rateb
Journal:  J Antibiot (Tokyo)       Date:  2016-06-29       Impact factor: 2.649

Review 9.  Accessing Bioactive Natural Products from the Human Microbiome.

Authors:  Aleksandr Milshteyn; Dominic A Colosimo; Sean F Brady
Journal:  Cell Host Microbe       Date:  2018-06-13       Impact factor: 21.023

10.  Multiplexed CRISPR/Cas9- and TAR-Mediated Promoter Engineering of Natural Product Biosynthetic Gene Clusters in Yeast.

Authors:  Hahk-Soo Kang; Zachary Charlop-Powers; Sean F Brady
Journal:  ACS Synth Biol       Date:  2016-06-10       Impact factor: 5.110

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