Literature DB >> 23949383

Initial characterization of histone H3 serine 10 O-acetylation.

Laura-Mae P Britton1, Alyshia Newhart2, Natarajan V Bhanu3, Rupa Sridharan4, Michelle Gonzales-Cope1, Kathrin Plath5, Susan M Janicki2, Benjamin A Garcia3.   

Abstract

In eukaryotic organisms, histone posttranslational modifications (PTMs) are indispensable for their role in maintaining cellular physiology, often through their mediation of chromatin-related processes such as transcription. Targeted investigations of this ever expanding network of chemical moieties continue to reveal genetic, biochemical, and cellular nuances of this complex landscape. In this study, we present our findings on a novel class of histone PTMs: Serine, Threonine, and Tyrosine O-acetylation. We have combined highly sensitive nano-LC-MS/MS experiments and immunodetection assays to identify and validate these unique marks found only on histone H3. Mass spectrometry experiments have determined that several of these O-acetylation marks are conserved in many species, ranging from yeast to human. Additionally, our investigations reveal that histone H3 serine 10 acetylation (H3S10ac) is potentially linked to cell cycle progression and cellular pluripotency. Here, we provide a glimpse into the functional implications of this H3-specific histone mark, which may be of high value for further studies of chromatin.

Entities:  

Keywords:  chromatin; epigenetics; histone; mass spectrometry; post-translational modifications; proteomics; quantitative; stem cells

Mesh:

Substances:

Year:  2013        PMID: 23949383      PMCID: PMC3891691          DOI: 10.4161/epi.26025

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  68 in total

Review 1.  Phosphorylation of serine 10 in histone H3, what for?

Authors:  Claude Prigent; Stefan Dimitrov
Journal:  J Cell Sci       Date:  2003-09-15       Impact factor: 5.285

2.  Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis.

Authors:  J Recht; T Tsubota; J C Tanny; R L Diaz; J M Berger; X Zhang; B A Garcia; J Shabanowitz; A L Burlingame; D F Hunt; P D Kaufman; C D Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-20       Impact factor: 11.205

3.  Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini.

Authors:  Sean D Taverna; Beatrix M Ueberheide; Yifan Liu; Alan J Tackett; Robert L Diaz; Jeffrey Shabanowitz; Brian T Chait; Donald F Hunt; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

4.  Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone code.

Authors:  Kaoru Sakabe; Zihao Wang; Gerald W Hart
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

5.  A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry.

Authors:  Richard C Baliban; Peter A DiMaggio; Mariana D Plazas-Mayorca; Nicolas L Young; Benjamin A Garcia; Christodoulos A Floudas
Journal:  Mol Cell Proteomics       Date:  2010-01-26       Impact factor: 5.911

6.  Histone modification levels are predictive for gene expression.

Authors:  Rosa Karlić; Ho-Ryun Chung; Julia Lasserre; Kristian Vlahovicek; Martin Vingron
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

7.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

8.  One-pot shotgun quantitative mass spectrometry characterization of histones.

Authors:  Mariana D Plazas-Mayorca; Barry M Zee; Nicolas L Young; Ian M Fingerman; Gary LeRoy; Scott D Briggs; Benjamin A Garcia
Journal:  J Proteome Res       Date:  2009-11       Impact factor: 4.466

9.  Complications in the assignment of 14 and 28 Da mass shift detected by mass spectrometry as in vivo methylation from endogenous proteins.

Authors:  Sung Yun Jung; Yehua Li; Yi Wang; Yue Chen; Yingming Zhao; Jun Qin
Journal:  Anal Chem       Date:  2008-02-05       Impact factor: 6.986

10.  Global turnover of histone post-translational modifications and variants in human cells.

Authors:  Barry M Zee; Rebecca S Levin; Peter A DiMaggio; Benjamin A Garcia
Journal:  Epigenetics Chromatin       Date:  2010-12-06       Impact factor: 4.954

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  13 in total

Review 1.  Analytical tools and current challenges in the modern era of neuroepigenomics.

Authors:  Ian Maze; Li Shen; Bin Zhang; Benjamin A Garcia; Ningyi Shao; Amanda Mitchell; HaoSheng Sun; Schahram Akbarian; C David Allis; Eric J Nestler
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

Review 2.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

Review 3.  Recent Achievements in Characterizing the Histone Code and Approaches to Integrating Epigenomics and Systems Biology.

Authors:  K A Janssen; S Sidoli; B A Garcia
Journal:  Methods Enzymol       Date:  2017-01-06       Impact factor: 1.600

4.  Yersinia pestis acetyltransferase-mediated dual acetylation at the serine and lysine residues enhances the auto-ubiquitination of ubiquitin ligase MARCH8 in human cells.

Authors:  Cuiling Li; Daoguang Wang; Xin Lv; Ruirui Jing; Baibin Bi; Xinjun Chen; Jisheng Guo; Fengqin Wang; Shengnan Sun; Kazem M Azadzoi; Jing-Hua Yang
Journal:  Cell Cycle       Date:  2017-01-19       Impact factor: 4.534

Review 5.  Comprehensive Catalog of Currently Documented Histone Modifications.

Authors:  Yingming Zhao; Benjamin A Garcia
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-09-01       Impact factor: 10.005

6.  Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite.

Authors:  Anita Saraf; Serena Cervantes; Evelien M Bunnik; Nadia Ponts; Mihaela E Sardiu; Duk-Won D Chung; Jacques Prudhomme; Joseph M Varberg; Zhihui Wen; Michael P Washburn; Laurence Florens; Karine G Le Roch
Journal:  J Proteome Res       Date:  2016-06-24       Impact factor: 4.466

7.  Cataloging Posttranslational Modifications in Plant Histones.

Authors:  Ericka Zacarias; J Armando Casas-Mollano
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

8.  High resolution is not a strict requirement for characterization and quantification of histone post-translational modifications.

Authors:  Kelly R Karch; Barry M Zee; Benjamin A Garcia
Journal:  J Proteome Res       Date:  2014-10-30       Impact factor: 4.466

9.  Analysis of Histones H3 and H4 Reveals Novel and Conserved Post-Translational Modifications in Sugarcane.

Authors:  Izabel Moraes; Zuo-Fei Yuan; Shichong Liu; Glaucia Mendes Souza; Benjamin A Garcia; J Armando Casas-Mollano
Journal:  PLoS One       Date:  2015-07-30       Impact factor: 3.240

10.  Post-Translational Modification of Human Histone by Wide Tolerance of Acetylation.

Authors:  Cuiling Li; Han-Pil Choi; Xiaoyue Wang; Fei Wu; Xinjun Chen; Xin Lü; Ruirui Jing; Hoon Ryu; Xingyuan Wang; Kazem M Azadzoi; Jing-Hua Yang
Journal:  Cells       Date:  2017-10-12       Impact factor: 6.600

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