Literature DB >> 23929341

Chinese hamster genome sequenced from sorted chromosomes.

Karina Brinkrolf, Oliver Rupp, Holger Laux, Florian Kollin, Wolfgang Ernst, Burkhard Linke, Rudolf Kofler, Sandrine Romand, Friedemann Hesse, Wolfgang E Budach, Sybille Galosy, Dethardt Müller, Thomas Noll, Johannes Wienberg, Thomas Jostock, Mark Leonard, Johannes Grillari, Andreas Tauch, Alexander Goesmann, Bernhard Helk, John E Mott, Alfred Pühler, Nicole Borth.   

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Year:  2013        PMID： 23929341     DOI： 10.1038/nbt.2645

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  8 in total

1.  Comparative chromosome map of the laboratory mouse and Chinese hamster defined by reciprocal chromosome painting.

Authors:  F Yang; P C O'Brien; M A Ferguson-Smith
Journal:  Chromosome Res       Date:  2000       Impact factor: 5.239

2.  High-quality draft assemblies of mammalian genomes from massively parallel sequence data.

Authors:  Sante Gnerre; Iain Maccallum; Dariusz Przybylski; Filipe J Ribeiro; Joshua N Burton; Bruce J Walker; Ted Sharpe; Giles Hall; Terrance P Shea; Sean Sykes; Aaron M Berlin; Daniel Aird; Maura Costello; Riza Daza; Louise Williams; Robert Nicol; Andreas Gnirke; Chad Nusbaum; Eric S Lander; David B Jaffe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

3.  Genetic characterization of CHO production host DG44 and derivative recombinant cell lines.

Authors:  M Derouazi; D Martinet; N Besuchet Schmutz; R Flaction; M Wicht; M Bertschinger; D L Hacker; J S Beckmann; F M Wurm
Journal:  Biochem Biophys Res Commun       Date:  2005-12-27       Impact factor: 3.575

4.  Construction of BAC-based physical map and analysis of chromosome rearrangement in Chinese hamster ovary cell lines.

Authors:  Yihua Cao; Shuichi Kimura; Takayuki Itoi; Kohsuke Honda; Hisao Ohtake; Takeshi Omasa
Journal:  Biotechnol Bioeng       Date:  2011-11-06       Impact factor: 4.530

5.  Bacterial artificial chromosome library for genome-wide analysis of Chinese hamster ovary cells.

Authors:  Takeshi Omasa; Yihua Cao; Joon Young Park; Yasuhiro Takagi; Shuichi Kimura; Hidenori Yano; Kohsuke Honda; Shuichi Asakawa; Nobuyoshi Shimizu; Hisao Ohtake
Journal:  Biotechnol Bioeng       Date:  2009-12-01       Impact factor: 4.530

6.  Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome.

Authors:  Nathan E Lewis; Xin Liu; Yuxiang Li; Harish Nagarajan; George Yerganian; Edward O'Brien; Aarash Bordbar; Anne M Roth; Jeffrey Rosenbloom; Chao Bian; Min Xie; Wenbin Chen; Ning Li; Deniz Baycin-Hizal; Haythem Latif; Jochen Forster; Michael J Betenbaugh; Iman Famili; Xun Xu; Jun Wang; Bernhard O Palsson
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

7.  Limitations of next-generation genome sequence assembly.

Authors:  Can Alkan; Saba Sajjadian; Evan E Eichler
Journal:  Nat Methods       Date:  2010-11-21       Impact factor: 28.547

8.  The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line.

Authors:  Xun Xu; Harish Nagarajan; Nathan E Lewis; Shengkai Pan; Zhiming Cai; Xin Liu; Wenbin Chen; Min Xie; Wenliang Wang; Stephanie Hammond; Mikael R Andersen; Norma Neff; Benedetto Passarelli; Winston Koh; H Christina Fan; Jianbin Wang; Yaoting Gui; Kelvin H Lee; Michael J Betenbaugh; Stephen R Quake; Iman Famili; Bernhard O Palsson; Jun Wang
Journal:  Nat Biotechnol       Date:  2011-07-31       Impact factor: 54.908
  8 in total
  45 in total

1.  Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA.

Authors:  Ilya G Kichigin; Massimo Giovannotti; Alex I Makunin; Bee L Ng; Marsel R Kabilov; Alexey E Tupikin; Vincenzo Caputo Barucchi; Andrea Splendiani; Paolo Ruggeri; Willem Rens; Patricia C M O'Brien; Malcolm A Ferguson-Smith; Alexander S Graphodatsky; Vladimir A Trifonov
Journal:  Mol Genet Genomics       Date:  2016-07-18       Impact factor: 3.291

Review 2.  Engineering the supply chain for protein production/secretion in yeasts and mammalian cells.

Authors:  Tobias Klein; Jens Niklas; Elmar Heinzle
Journal:  J Ind Microbiol Biotechnol       Date:  2015-01-06       Impact factor: 3.346

Review 3.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

4.  Unveiling the principle of microRNA-mediated redundancy in cellular pathway regulation.

Authors:  Simon Fischer; René Handrick; Armaz Aschrafi; Kerstin Otte
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements.

Authors:  Shangzhong Li; Seong Won Cha; Kelly Heffner; Deniz Baycin Hizal; Michael A Bowen; Raghothama Chaerkady; Robert N Cole; Vijay Tejwani; Prashant Kaushik; Michael Henry; Paula Meleady; Susan T Sharfstein; Michael J Betenbaugh; Vineet Bafna; Nathan E Lewis
Journal:  J Proteome Res       Date:  2019-05-08       Impact factor: 4.466

6.  A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.

Authors:  Hooman Hefzi; Kok Siong Ang; Michael Hanscho; Aarash Bordbar; David Ruckerbauer; Meiyappan Lakshmanan; Camila A Orellana; Deniz Baycin-Hizal; Yingxiang Huang; Daniel Ley; Veronica S Martinez; Sarantos Kyriakopoulos; Natalia E Jiménez; Daniel C Zielinski; Lake-Ee Quek; Tune Wulff; Johnny Arnsdorf; Shangzhong Li; Jae Seong Lee; Giuseppe Paglia; Nicolas Loira; Philipp N Spahn; Lasse E Pedersen; Jahir M Gutierrez; Zachary A King; Anne Mathilde Lund; Harish Nagarajan; Alex Thomas; Alyaa M Abdel-Haleem; Juergen Zanghellini; Helene F Kildegaard; Bjørn G Voldborg; Ziomara P Gerdtzen; Michael J Betenbaugh; Bernhard O Palsson; Mikael R Andersen; Lars K Nielsen; Nicole Borth; Dong-Yup Lee; Nathan E Lewis
Journal:  Cell Syst       Date:  2016-11-23       Impact factor: 10.304

7.  Regulation of miR-29b-1/a transcription and identification of target mRNAs in CHO-K1 cells.

Authors:  Penn Muluhngwi; Kirsten Richardson; Joshua Napier; Eric C Rouchka; Justin L Mott; Carolyn M Klinge
Journal:  Mol Cell Endocrinol       Date:  2017-01-28       Impact factor: 4.102

Review 8.  The role of replicates for error mitigation in next-generation sequencing.

Authors:  Kimberly Robasky; Nathan E Lewis; George M Church
Journal:  Nat Rev Genet       Date:  2013-12-10       Impact factor: 53.242

9.  Knockout of a difficult-to-remove CHO host cell protein, lipoprotein lipase, for improved polysorbate stability in monoclonal antibody formulations.

Authors:  Josephine Chiu; Kristin N Valente; Nicholas E Levy; Lie Min; Abraham M Lenhoff; Kelvin H Lee
Journal:  Biotechnol Bioeng       Date:  2016-12-27       Impact factor: 4.530

10.  Improvements in protein production in mammalian cells from targeted metabolic engineering.

Authors:  Anne Richelle; Nathan E Lewis
Journal:  Curr Opin Syst Biol       Date:  2017-06-06
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