Literature DB >> 23898177

On the origins of hierarchy in complex networks.

Bernat Corominas-Murtra1, Joaquín Goñi, Ricard V Solé, Carlos Rodríguez-Caso.   

Abstract

Hierarchy seems to pervade complexity in both living and artificial systems. Despite its relevance, no general theory that captures all features of hierarchy and its origins has been proposed yet. Here we present a formal approach resulting from the convergence of theoretical morphology and network theory that allows constructing a 3D morphospace of hierarchies and hence comparing the hierarchical organization of ecological, cellular, technological, and social networks. Embedded within large voids in the morphospace of all possible hierarchies, four major groups are identified. Two of them match the expected from random networks with similar connectivity, thus suggesting that nonadaptive factors are at work. Ecological and gene networks define the other two, indicating that their topological order is the result of functional constraints. These results are consistent with an exploration of the morphospace, using in silico evolved networks.

Entities:  

Keywords:  evolution; modularity

Mesh:

Year:  2013        PMID: 23898177      PMCID: PMC3746874          DOI: 10.1073/pnas.1300832110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Evolutionary exploitation of design options by the first animals with hard skeletons.

Authors:  R D Thomas; R M Shearman; G W Stewart
Journal:  Science       Date:  2000-05-19       Impact factor: 47.728

2.  Thermodynamics of fractal networks.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-04-29       Impact factor: 9.161

3.  Giant strongly connected component of directed networks.

Authors:  S N Dorogovtsev; J F Mendes; A N Samukhin
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-07-19

4.  Hierarchical organization of modularity in metabolic networks.

Authors:  E Ravasz; A L Somera; D A Mongru; Z N Oltvai; A L Barabási
Journal:  Science       Date:  2002-08-30       Impact factor: 47.728

Review 5.  The evolution of hierarchical gene regulatory networks.

Authors:  Douglas H Erwin; Eric H Davidson
Journal:  Nat Rev Genet       Date:  2009-01-13       Impact factor: 53.242

6.  Hierarchical structure and the prediction of missing links in networks.

Authors:  Aaron Clauset; Cristopher Moore; M E J Newman
Journal:  Nature       Date:  2008-05-01       Impact factor: 49.962

7.  Exploring the randomness of directed acyclic networks.

Authors:  Joaquín Goñi; Bernat Corominas-Murtra; Ricard V Solé; Carlos Rodríguez-Caso
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-12-17

8.  Hierarchy in directed random networks.

Authors:  Enys Mones
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-02-25

9.  Exploring the morphospace of communication efficiency in complex networks.

Authors:  Joaquín Goñi; Andrea Avena-Koenigsberger; Nieves Velez de Mendizabal; Martijn P van den Heuvel; Richard F Betzel; Olaf Sporns
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

10.  The Edinburgh human metabolic network reconstruction and its functional analysis.

Authors:  Hongwu Ma; Anatoly Sorokin; Alexander Mazein; Alex Selkov; Evgeni Selkov; Oleg Demin; Igor Goryanin
Journal:  Mol Syst Biol       Date:  2007-09-18       Impact factor: 11.429

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  32 in total

Review 1.  Evolutionary aspects of reservoir computing.

Authors:  Luís F Seoane
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-10       Impact factor: 6.237

2.  Evolving complexity: how tinkering shapes cells, software and ecological networks.

Authors:  Ricard Solé; Sergi Valverde
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-24       Impact factor: 6.237

3.  Neural network organization for courtship-song feature detection in Drosophila.

Authors:  Christa A Baker; Claire McKellar; Rich Pang; Aljoscha Nern; Sven Dorkenwald; Diego A Pacheco; Nils Eckstein; Jan Funke; Barry J Dickson; Mala Murthy
Journal:  Curr Biol       Date:  2022-07-05       Impact factor: 10.900

4.  The Structural and Functional Connectome and Prediction of Risk for Cognitive Impairment in Older Adults.

Authors:  Joey A Contreras; Joaquín Goñi; Shannon L Risacher; Olaf Sporns; Andrew J Saykin
Journal:  Curr Behav Neurosci Rep       Date:  2015-10-29

5.  The Evolutionary Origins of Hierarchy.

Authors:  Henok Mengistu; Joost Huizinga; Jean-Baptiste Mouret; Jeff Clune
Journal:  PLoS Comput Biol       Date:  2016-06-09       Impact factor: 4.475

6.  Graph hierarchy: a novel framework to analyse hierarchical structures in complex networks.

Authors:  Giannis Moutsinas; Choudhry Shuaib; Weisi Guo; Stephen Jarvis
Journal:  Sci Rep       Date:  2021-07-06       Impact factor: 4.379

7.  An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome.

Authors:  Chao Cheng; Erik Andrews; Koon-Kiu Yan; Matthew Ung; Daifeng Wang; Mark Gerstein
Journal:  Genome Biol       Date:  2015-03-31       Impact factor: 13.583

8.  Using Pareto optimality to explore the topology and dynamics of the human connectome.

Authors:  Andrea Avena-Koenigsberger; Joaquín Goñi; Richard F Betzel; Martijn P van den Heuvel; Alessandra Griffa; Patric Hagmann; Jean-Philippe Thiran; Olaf Sporns
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-10-05       Impact factor: 6.237

9.  Inherent directionality explains the lack of feedback loops in empirical networks.

Authors:  Virginia Domínguez-García; Simone Pigolotti; Miguel A Muñoz
Journal:  Sci Rep       Date:  2014-12-22       Impact factor: 4.379

Review 10.  Network morphospace.

Authors:  Andrea Avena-Koenigsberger; Joaquín Goñi; Ricard Solé; Olaf Sporns
Journal:  J R Soc Interface       Date:  2015-02-06       Impact factor: 4.118

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