Literature DB >> 34230531

Graph hierarchy: a novel framework to analyse hierarchical structures in complex networks.

Giannis Moutsinas1, Choudhry Shuaib2, Weisi Guo3, Stephen Jarvis4.   

Abstract

Trophic coherence, a measure of a graph's hierarchical organisation, has been shown to be linked to a graph's structural and dynamical aspects such as cyclicity, stability and normality. Trophic levels of vertices can reveal their functional properties, partition and rank the vertices accordingly. Trophic levels and hence trophic coherence can only be defined on graphs with basal vertices, i.e. vertices with zero in-degree. Consequently, trophic analysis of graphs had been restricted until now. In this paper we introduce a hierarchical framework which can be defined on any simple graph. Within this general framework, we develop several metrics: hierarchical levels, a generalisation of the notion of trophic levels, influence centrality, a measure of a vertex's ability to influence dynamics, and democracy coefficient, a measure of overall feedback in the system. We discuss how our generalisation relates to previous attempts and what new insights are illuminated on the topological and dynamical aspects of graphs. Finally, we show how the hierarchical structure of a network relates to the incidence rate in a SIS epidemic model and the economic insights we can gain through it.

Entities:  

Year:  2021        PMID: 34230531     DOI: 10.1038/s41598-021-93161-4

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  22 in total

1.  Hierarchical organization of modularity in metabolic networks.

Authors:  E Ravasz; A L Somera; D A Mongru; Z N Oltvai; A L Barabási
Journal:  Science       Date:  2002-08-30       Impact factor: 47.728

2.  Hierarchy measures in complex networks.

Authors:  Ala Trusina; Sergei Maslov; Petter Minnhagen; Kim Sneppen
Journal:  Phys Rev Lett       Date:  2004-04-29       Impact factor: 9.161

3.  On the origins of hierarchy in complex networks.

Authors:  Bernat Corominas-Murtra; Joaquín Goñi; Ricard V Solé; Carlos Rodríguez-Caso
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

4.  Collective dynamics of 'small-world' networks.

Authors:  D J Watts; S H Strogatz
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

Review 5.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

Review 6.  Network neuroscience.

Authors:  Danielle S Bassett; Olaf Sporns
Journal:  Nat Neurosci       Date:  2017-02-23       Impact factor: 24.884

7.  Architecture of the human regulatory network derived from ENCODE data.

Authors:  Mark B Gerstein; Anshul Kundaje; Manoj Hariharan; Stephen G Landt; Koon-Kiu Yan; Chao Cheng; Xinmeng Jasmine Mu; Ekta Khurana; Joel Rozowsky; Roger Alexander; Renqiang Min; Pedro Alves; Alexej Abyzov; Nick Addleman; Nitin Bhardwaj; Alan P Boyle; Philip Cayting; Alexandra Charos; David Z Chen; Yong Cheng; Declan Clarke; Catharine Eastman; Ghia Euskirchen; Seth Frietze; Yao Fu; Jason Gertz; Fabian Grubert; Arif Harmanci; Preti Jain; Maya Kasowski; Phil Lacroute; Jing Jane Leng; Jin Lian; Hannah Monahan; Henriette O'Geen; Zhengqing Ouyang; E Christopher Partridge; Dorrelyn Patacsil; Florencia Pauli; Debasish Raha; Lucia Ramirez; Timothy E Reddy; Brian Reed; Minyi Shi; Teri Slifer; Jing Wang; Linfeng Wu; Xinqiong Yang; Kevin Y Yip; Gili Zilberman-Schapira; Serafim Batzoglou; Arend Sidow; Peggy J Farnham; Richard M Myers; Sherman M Weissman; Michael Snyder
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

8.  Hierarchy measure for complex networks.

Authors:  Enys Mones; Lilla Vicsek; Tamás Vicsek
Journal:  PLoS One       Date:  2012-03-28       Impact factor: 3.240

9.  An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome.

Authors:  Chao Cheng; Erik Andrews; Koon-Kiu Yan; Matthew Ung; Daifeng Wang; Mark Gerstein
Journal:  Genome Biol       Date:  2015-03-31       Impact factor: 13.583

10.  Using arborescences to estimate hierarchicalness in directed complex networks.

Authors:  Michele Coscia
Journal:  PLoS One       Date:  2018-01-30       Impact factor: 3.240

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  1 in total

1.  Hierarchy Depth in Directed Networks.

Authors:  Krzysztof Suchecki; Janusz A Hołyst
Journal:  Entropy (Basel)       Date:  2022-02-08       Impact factor: 2.524

  1 in total

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