Literature DB >> 27280881

The Evolutionary Origins of Hierarchy.

Henok Mengistu1, Joost Huizinga1, Jean-Baptiste Mouret2,3,4, Jeff Clune1.   

Abstract

Hierarchical organization-the recursive composition of sub-modules-is ubiquitous in biological networks, including neural, metabolic, ecological, and genetic regulatory networks, and in human-made systems, such as large organizations and the Internet. To date, most research on hierarchy in networks has been limited to quantifying this property. However, an open, important question in evolutionary biology is why hierarchical organization evolves in the first place. It has recently been shown that modularity evolves because of the presence of a cost for network connections. Here we investigate whether such connection costs also tend to cause a hierarchical organization of such modules. In computational simulations, we find that networks without a connection cost do not evolve to be hierarchical, even when the task has a hierarchical structure. However, with a connection cost, networks evolve to be both modular and hierarchical, and these networks exhibit higher overall performance and evolvability (i.e. faster adaptation to new environments). Additional analyses confirm that hierarchy independently improves adaptability after controlling for modularity. Overall, our results suggest that the same force-the cost of connections-promotes the evolution of both hierarchy and modularity, and that these properties are important drivers of network performance and adaptability. In addition to shedding light on the emergence of hierarchy across the many domains in which it appears, these findings will also accelerate future research into evolving more complex, intelligent computational brains in the fields of artificial intelligence and robotics.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27280881      PMCID: PMC4900613          DOI: 10.1371/journal.pcbi.1004829

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  45 in total

1.  Large-scale topological and dynamical properties of the Internet.

Authors:  Alexei Vázquez; Romualdo Pastor-Satorras; Alessandro Vespignani
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-06-28

2.  The evolutionary origin of complex features.

Authors:  Richard E Lenski; Charles Ofria; Robert T Pennock; Christoph Adami
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

3.  Hierarchical organization of modularity in metabolic networks.

Authors:  E Ravasz; A L Somera; D A Mongru; Z N Oltvai; A L Barabási
Journal:  Science       Date:  2002-08-30       Impact factor: 47.728

4.  Exact solution for the optimal neuronal layout problem.

Authors:  Dmitri B Chklovskii
Journal:  Neural Comput       Date:  2004-10       Impact factor: 2.026

5.  Abandoning objectives: evolution through the search for novelty alone.

Authors:  Joel Lehman; Kenneth O Stanley
Journal:  Evol Comput       Date:  2011-02-14       Impact factor: 3.277

6.  Wiring optimization can relate neuronal structure and function.

Authors:  Beth L Chen; David H Hall; Dmitri B Chklovskii
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

Review 7.  Communication in neuronal networks.

Authors:  Simon B Laughlin; Terrence J Sejnowski
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

8.  Modular and hierarchically modular organization of brain networks.

Authors:  David Meunier; Renaud Lambiotte; Edward T Bullmore
Journal:  Front Neurosci       Date:  2010-12-08       Impact factor: 4.677

9.  Hierarchical modularity in human brain functional networks.

Authors:  David Meunier; Renaud Lambiotte; Alex Fornito; Karen D Ersche; Edward T Bullmore
Journal:  Front Neuroinform       Date:  2009-10-30       Impact factor: 4.081

10.  Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star?

Authors:  Dániel Czégel; Gergely Palla
Journal:  Sci Rep       Date:  2015-12-10       Impact factor: 4.379

View more
  25 in total

Review 1.  The hierarchically mechanistic mind: an evolutionary systems theory of the human brain, cognition, and behavior.

Authors:  Paul B Badcock; Karl J Friston; Maxwell J D Ramstead; Annemie Ploeger; Jakob Hohwy
Journal:  Cogn Affect Behav Neurosci       Date:  2019-12       Impact factor: 3.282

Review 2.  Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs.

Authors:  Neda Eskandarzade; Abozar Ghorbani; Samira Samarfard; Jose Diaz; Pietro H Guzzi; Niloofar Fariborzi; Ahmad Tahmasebi; Keramatollah Izadpanah
Journal:  Comput Biol Med       Date:  2022-04-30       Impact factor: 6.698

3.  Hierarchical dynamics of informational patterns and decision-making.

Authors:  Pablo Varona; Mikhail I Rabinovich
Journal:  Proc Biol Sci       Date:  2016-06-15       Impact factor: 5.349

4.  Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole-Genome Duplication.

Authors:  Zhicheng Zhang; Heleen Coenen; Philip Ruelens; Rashmi R Hazarika; Tareq Al Hindi; Georgianna K Oguis; Anja Vandeperre; Vera van Noort; Koen Geuten
Journal:  Plant Cell       Date:  2018-10-17       Impact factor: 11.277

5.  Diffusion-based neuromodulation can eliminate catastrophic forgetting in simple neural networks.

Authors:  Roby Velez; Jeff Clune
Journal:  PLoS One       Date:  2017-11-16       Impact factor: 3.240

6.  Topological Filtering of Dynamic Functional Brain Networks Unfolds Informative Chronnectomics: A Novel Data-Driven Thresholding Scheme Based on Orthogonal Minimal Spanning Trees (OMSTs).

Authors:  Stavros I Dimitriadis; Christos Salis; Ioannis Tarnanas; David E Linden
Journal:  Front Neuroinform       Date:  2017-04-26       Impact factor: 4.081

7.  Glassy nature of hierarchical organizations.

Authors:  Maryam Zamani; Tamas Vicsek
Journal:  Sci Rep       Date:  2017-05-03       Impact factor: 4.379

8.  How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation.

Authors:  Kostas Kouvaris; Jeff Clune; Loizos Kounios; Markus Brede; Richard A Watson
Journal:  PLoS Comput Biol       Date:  2017-04-06       Impact factor: 4.475

9.  Menzerath-Altmann's Law of Syntax in RNA Accretion History.

Authors:  Fengjie Sun; Gustavo Caetano-Anollés
Journal:  Life (Basel)       Date:  2021-05-27

Review 10.  Answering Schrödinger's question: A free-energy formulation.

Authors:  Maxwell James Désormeau Ramstead; Paul Benjamin Badcock; Karl John Friston
Journal:  Phys Life Rev       Date:  2017-09-20       Impact factor: 11.025

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.