| Literature DB >> 21589177 |
Hoong-Kun Fun, Chin Sing Yeap, R Venkat Ragavan, V Vijayakumar, S Sarveswari.
Abstract
The title compound, C(9)H(14)N(2)O, exists in the zwitterionic form in the crystal. The cyclo-octane ring adopts a twisted boat-chair conformation. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into sheets lying parallel to bc. The structure is also stabilized by π-π inter-actions, with a centroid-to-centroid distance of 3.5684 (8) Å.Entities:
Year: 2010 PMID: 21589177 PMCID: PMC3009207 DOI: 10.1107/S1600536810043904
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H14N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3802 reflections |
| θ = 3.5–30.1° | |
| µ = 0.09 mm−1 | |
| β = 111.620 (1)° | Plate, colourless |
| 0.54 × 0.24 × 0.11 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 1680 independent reflections |
| Radiation source: fine-focus sealed tube | 1474 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 6990 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1680 reflections | (Δ/σ)max < 0.001 |
| 117 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.41579 (8) | 0.06094 (13) | 0.31883 (8) | 0.0190 (2) | |
| N1 | 0.44456 (9) | 0.21181 (16) | 0.52370 (10) | 0.0160 (3) | |
| N2 | 0.41423 (9) | 0.38447 (16) | 0.56789 (11) | 0.0154 (3) | |
| C1 | 0.34257 (10) | 0.48051 (18) | 0.46046 (12) | 0.0149 (3) | |
| C2 | 0.28502 (11) | 0.66563 (19) | 0.47482 (13) | 0.0177 (3) | |
| H2A | 0.2711 | 0.7476 | 0.3961 | 0.021* | |
| H2B | 0.3335 | 0.7384 | 0.5525 | 0.021* | |
| C3 | 0.17257 (11) | 0.6209 (2) | 0.49123 (12) | 0.0189 (3) | |
| H3A | 0.1883 | 0.5734 | 0.5818 | 0.023* | |
| H3B | 0.1306 | 0.7430 | 0.4807 | 0.023* | |
| C4 | 0.09909 (11) | 0.4691 (2) | 0.39200 (12) | 0.0185 (3) | |
| H4A | 0.0295 | 0.4555 | 0.4075 | 0.022* | |
| H4B | 0.1371 | 0.3426 | 0.4113 | 0.022* | |
| C5 | 0.07002 (11) | 0.5164 (2) | 0.24164 (12) | 0.0191 (3) | |
| H5A | −0.0105 | 0.5025 | 0.1954 | 0.023* | |
| H5B | 0.0888 | 0.6534 | 0.2339 | 0.023* | |
| C6 | 0.12881 (11) | 0.38840 (19) | 0.16907 (12) | 0.0189 (3) | |
| H6A | 0.0905 | 0.4065 | 0.0731 | 0.023* | |
| H6B | 0.1202 | 0.2510 | 0.1889 | 0.023* | |
| C7 | 0.25452 (11) | 0.42986 (19) | 0.20469 (12) | 0.0177 (3) | |
| H7A | 0.2795 | 0.3581 | 0.1424 | 0.021* | |
| H7B | 0.2640 | 0.5695 | 0.1918 | 0.021* | |
| C8 | 0.32877 (10) | 0.37496 (19) | 0.34518 (12) | 0.0153 (3) | |
| C9 | 0.39626 (10) | 0.20329 (18) | 0.38724 (12) | 0.0150 (3) | |
| H1N1 | 0.4969 (14) | 0.125 (3) | 0.5823 (17) | 0.030 (4)* | |
| H1N2 | 0.4229 (14) | 0.397 (3) | 0.6572 (19) | 0.037 (5)* |
| O1 | 0.0272 (5) | 0.0181 (5) | 0.0123 (4) | 0.0062 (4) | 0.0082 (4) | 0.0006 (3) |
| N1 | 0.0201 (6) | 0.0158 (5) | 0.0122 (5) | 0.0031 (4) | 0.0061 (4) | 0.0007 (4) |
| N2 | 0.0181 (6) | 0.0167 (5) | 0.0122 (5) | 0.0012 (4) | 0.0065 (4) | −0.0012 (4) |
| C1 | 0.0149 (6) | 0.0163 (6) | 0.0150 (6) | −0.0015 (5) | 0.0072 (5) | 0.0013 (5) |
| C2 | 0.0214 (7) | 0.0155 (6) | 0.0166 (6) | −0.0001 (5) | 0.0076 (5) | −0.0017 (5) |
| C3 | 0.0204 (7) | 0.0207 (7) | 0.0165 (6) | 0.0025 (5) | 0.0078 (5) | −0.0021 (5) |
| C4 | 0.0179 (7) | 0.0212 (7) | 0.0182 (6) | 0.0003 (5) | 0.0090 (5) | −0.0014 (5) |
| C5 | 0.0179 (7) | 0.0217 (7) | 0.0163 (7) | 0.0025 (5) | 0.0045 (5) | −0.0006 (5) |
| C6 | 0.0223 (7) | 0.0203 (7) | 0.0130 (6) | 0.0034 (5) | 0.0051 (5) | 0.0004 (5) |
| C7 | 0.0227 (7) | 0.0192 (6) | 0.0126 (6) | 0.0053 (5) | 0.0082 (5) | 0.0035 (5) |
| C8 | 0.0165 (6) | 0.0168 (6) | 0.0144 (6) | 0.0001 (5) | 0.0078 (5) | 0.0012 (5) |
| C9 | 0.0168 (6) | 0.0172 (6) | 0.0118 (6) | −0.0001 (5) | 0.0061 (5) | 0.0011 (5) |
| O1—C9 | 1.2902 (15) | C4—C5 | 1.5467 (17) |
| N1—C9 | 1.3622 (16) | C4—H4A | 0.9700 |
| N1—N2 | 1.3708 (15) | C4—H4B | 0.9700 |
| N1—H1N1 | 0.939 (18) | C5—C6 | 1.5343 (17) |
| N2—C1 | 1.3459 (16) | C5—H5A | 0.9700 |
| N2—H1N2 | 0.925 (19) | C5—H5B | 0.9700 |
| C1—C8 | 1.3807 (17) | C6—C7 | 1.5377 (18) |
| C1—C2 | 1.4912 (17) | C6—H6A | 0.9700 |
| C2—C3 | 1.5438 (17) | C6—H6B | 0.9700 |
| C2—H2A | 0.9700 | C7—C8 | 1.5007 (17) |
| C2—H2B | 0.9700 | C7—H7A | 0.9700 |
| C3—C4 | 1.5283 (18) | C7—H7B | 0.9700 |
| C3—H3A | 0.9700 | C8—C9 | 1.4199 (17) |
| C3—H3B | 0.9700 | ||
| C9—N1—N2 | 109.39 (10) | H4A—C4—H4B | 107.4 |
| C9—N1—H1N1 | 128.4 (10) | C6—C5—C4 | 115.83 (11) |
| N2—N1—H1N1 | 121.9 (10) | C6—C5—H5A | 108.3 |
| C1—N2—N1 | 107.96 (10) | C4—C5—H5A | 108.3 |
| C1—N2—H1N2 | 128.7 (11) | C6—C5—H5B | 108.3 |
| N1—N2—H1N2 | 119.5 (11) | C4—C5—H5B | 108.3 |
| N2—C1—C8 | 109.65 (11) | H5A—C5—H5B | 107.4 |
| N2—C1—C2 | 121.73 (11) | C5—C6—C7 | 115.82 (11) |
| C8—C1—C2 | 128.51 (11) | C5—C6—H6A | 108.3 |
| C1—C2—C3 | 111.34 (10) | C7—C6—H6A | 108.3 |
| C1—C2—H2A | 109.4 | C5—C6—H6B | 108.3 |
| C3—C2—H2A | 109.4 | C7—C6—H6B | 108.3 |
| C1—C2—H2B | 109.4 | H6A—C6—H6B | 107.4 |
| C3—C2—H2B | 109.4 | C8—C7—C6 | 114.98 (10) |
| H2A—C2—H2B | 108.0 | C8—C7—H7A | 108.5 |
| C4—C3—C2 | 114.47 (10) | C6—C7—H7A | 108.5 |
| C4—C3—H3A | 108.6 | C8—C7—H7B | 108.5 |
| C2—C3—H3A | 108.6 | C6—C7—H7B | 108.5 |
| C4—C3—H3B | 108.6 | H7A—C7—H7B | 107.5 |
| C2—C3—H3B | 108.6 | C1—C8—C9 | 106.16 (11) |
| H3A—C3—H3B | 107.6 | C1—C8—C7 | 126.38 (11) |
| C3—C4—C5 | 115.79 (11) | C9—C8—C7 | 127.44 (11) |
| C3—C4—H4A | 108.3 | O1—C9—N1 | 122.31 (11) |
| C5—C4—H4A | 108.3 | O1—C9—C8 | 130.92 (11) |
| C3—C4—H4B | 108.3 | N1—C9—C8 | 106.76 (11) |
| C5—C4—H4B | 108.3 | ||
| C9—N1—N2—C1 | 2.98 (13) | C2—C1—C8—C9 | −175.54 (12) |
| N1—N2—C1—C8 | −2.13 (13) | N2—C1—C8—C7 | 178.99 (11) |
| N1—N2—C1—C2 | 174.25 (11) | C2—C1—C8—C7 | 2.9 (2) |
| N2—C1—C2—C3 | −89.09 (14) | C6—C7—C8—C1 | −77.60 (16) |
| C8—C1—C2—C3 | 86.55 (15) | C6—C7—C8—C9 | 100.55 (14) |
| C1—C2—C3—C4 | −46.15 (14) | N2—N1—C9—O1 | 176.18 (11) |
| C2—C3—C4—C5 | −55.64 (15) | N2—N1—C9—C8 | −2.61 (13) |
| C3—C4—C5—C6 | 108.08 (13) | C1—C8—C9—O1 | −177.37 (13) |
| C4—C5—C6—C7 | −72.87 (15) | C7—C8—C9—O1 | 4.2 (2) |
| C5—C6—C7—C8 | 68.15 (15) | C1—C8—C9—N1 | 1.29 (13) |
| N2—C1—C8—C9 | 0.52 (14) | C7—C8—C9—N1 | −177.16 (11) |
| H··· | ||||
| N1—H1N1···O1i | 0.938 (19) | 1.757 (19) | 2.6900 (14) | 173.0 (19) |
| N2—H1N2···O1ii | 0.925 (19) | 1.789 (19) | 2.7056 (14) | 170.1 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N1⋯O1i | 0.938 (19) | 1.757 (19) | 2.6900 (14) | 173.0 (19) |
| N2—H1N2⋯O1ii | 0.925 (19) | 1.789 (19) | 2.7056 (14) | 170.1 (18) |
Symmetry codes: (i) ; (ii) .