Literature DB >> 23868853

Proton transfer through the water gossamer.

Ali Hassanali1, Federico Giberti, Jérôme Cuny, Thomas D Kühne, Michele Parrinello.   

Abstract

The diffusion of protons through water is understood within the framework of the Grotthuss mechanism, which requires that they undergo structural diffusion in a stepwise manner throughout the water network. Despite long study, this picture oversimplifies and neglects the complexity of the supramolecular structure of water. We use first-principles simulations and demonstrate that the currently accepted picture of proton diffusion is in need of revision. We show that proton and hydroxide diffusion occurs through periods of intense activity involving concerted proton hopping followed by periods of rest. The picture that emerges is that proton transfer is a multiscale and multidynamical process involving a broader distribution of pathways and timescales than currently assumed. To rationalize these phenomena, we look at the 3D water network as a distribution of closed directed rings, which reveals the presence of medium-range directional correlations in the liquid. One of the natural consequences of this feature is that both the hydronium and hydroxide ion are decorated with proton wires. These wires serve as conduits for long proton jumps over several hydrogen bonds.

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Year:  2013        PMID: 23868853      PMCID: PMC3752248          DOI: 10.1073/pnas.1306642110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

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2.  Canonical sampling through velocity rescaling.

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Authors:  M Jocelyn Cox; Rutger L A Timmer; Huib J Bakker; Soohyung Park; Noam Agmon
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4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

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5.  Aqueous basic solutions: hydroxide solvation, structural diffusion, and comparison to the hydrated proton.

Authors:  Dominik Marx; Amalendu Chandra; Mark E Tuckerman
Journal:  Chem Rev       Date:  2010-04-14       Impact factor: 60.622

6.  Observation of a Zundel-like transition state during proton transfer in aqueous hydroxide solutions.

Authors:  Sean T Roberts; Poul B Petersen; Krupa Ramasesha; Andrei Tokmakoff; Ivan S Ufimtsev; Todd J Martinez
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-31       Impact factor: 11.205

7.  Ultrafast vibrational and structural dynamics of the proton in liquid water.

Authors:  Sander Woutersen; Huib J Bakker
Journal:  Phys Rev Lett       Date:  2006-04-06       Impact factor: 9.161

Review 8.  Computer simulation of proton solvation and transport in aqueous and biomolecular systems.

Authors:  Gregory A Voth
Journal:  Acc Chem Res       Date:  2006-02       Impact factor: 22.384

9.  Topological building blocks of hydrogen bond network in water.

Authors:  M Matsumoto; A Baba; I Ohmine
Journal:  J Chem Phys       Date:  2007-10-07       Impact factor: 3.488

10.  On the recombination of hydronium and hydroxide ions in water.

Authors:  Ali Hassanali; Meher K Prakash; Hagai Eshet; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

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  35 in total

Review 1.  Philosophy of voltage-gated proton channels.

Authors:  Thomas E DeCoursey; Jonathan Hosler
Journal:  J R Soc Interface       Date:  2013-12-18       Impact factor: 4.118

2.  Probing the mechanisms of proton transfer in liquid water.

Authors:  Edelsys Codorniu-Hernández; Peter G Kusalik
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-08       Impact factor: 11.205

3.  Nuclear quantum effects and hydrogen bond fluctuations in water.

Authors:  Michele Ceriotti; Jérôme Cuny; Michele Parrinello; David E Manolopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-06       Impact factor: 11.205

4.  Proton strings and rings in atypical nucleation of ferroelectricity in ice.

Authors:  J Lasave; S Koval; A Laio; E Tosatti
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 11.205

5.  Molecular transport: Catch the carbon dioxide.

Authors:  Barbara Kirchner; Barbara Intemann
Journal:  Nat Chem       Date:  2016-04-22       Impact factor: 24.427

6.  Local initiation conditions for water autoionization.

Authors:  Mahmoud Moqadam; Anders Lervik; Enrico Riccardi; Vishwesh Venkatraman; Bjørn Kåre Alsberg; Titus S van Erp
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-30       Impact factor: 11.205

7.  Water is an active matrix of life for cell and molecular biology.

Authors:  Philip Ball
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-07       Impact factor: 11.205

8.  How amide hydrogens exchange in native proteins.

Authors:  Filip Persson; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-20       Impact factor: 11.205

Review 9.  Protons and Hydroxide Ions in Aqueous Systems.

Authors:  Noam Agmon; Huib J Bakker; R Kramer Campen; Richard H Henchman; Peter Pohl; Sylvie Roke; Martin Thämer; Ali Hassanali
Journal:  Chem Rev       Date:  2016-06-17       Impact factor: 60.622

10.  Anomalous water diffusion in salt solutions.

Authors:  Yun Ding; Ali A Hassanali; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-12       Impact factor: 11.205

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