Literature DB >> 16489734

Computer simulation of proton solvation and transport in aqueous and biomolecular systems.

Gregory A Voth1.   

Abstract

The excess proton in aqueous media is critical to many aspects of chemistry, biology, and materials science. This species is at the heart of the most elementary of chemical (e.g., acid-base) and biological (e.g., bioenergetics) concepts, yet to this day, it remains mysterious, surprising, and often misunderstood. In this Account, our efforts to describe excess proton solvation and transport through computer modeling and simulation will be described. Results will be summarized for several important systems, as obtained from the multistate empirical valence bond (MS-EVB) approach, which allows for the explicit treatment of (Grotthuss) proton shuttling and charge delocalization.

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Year:  2006        PMID: 16489734     DOI: 10.1021/ar0402098

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  56 in total

1.  Ion dynamics: Wired-up water.

Authors:  David Chandler; Christoph Dellago; Phillip Geissler
Journal:  Nat Chem       Date:  2012-03-22       Impact factor: 24.427

2.  "Proton holes" in long-range proton transfer reactions in solution and enzymes: A theoretical analysis.

Authors:  Demian Riccardi; Peter König; Xavier Prat-Resina; Haibo Yu; Marcus Elstner; Thomas Frauenheim; Qiang Cui
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

3.  Charge delocalization in proton channels, I: the aquaporin channels and proton blockage.

Authors:  Hanning Chen; Boaz Ilan; Yujie Wu; Fangqiang Zhu; Klaus Schulten; Gregory A Voth
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

4.  Storage of an excess proton in the hydrogen-bonded network of the d-pathway of cytochrome C oxidase: identification of a protonated water cluster.

Authors:  Jiancong Xu; Martyn A Sharpe; Ling Qin; Shelagh Ferguson-Miller; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2007-02-20       Impact factor: 15.419

Review 5.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

6.  Modeling negative ion defect migration through the gramicidin A channel.

Authors:  Alexander V Nemukhin; Ilya A Kaliman; Alexander A Moskovsky
Journal:  J Mol Model       Date:  2009-02-07       Impact factor: 1.810

7.  Proton transfer through the water gossamer.

Authors:  Ali Hassanali; Federico Giberti; Jérôme Cuny; Thomas D Kühne; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-18       Impact factor: 11.205

8.  Many-body energies during proton transfer in an aqueous system.

Authors:  Ajay Chaudhari; Gul Afroz Meraj; Shyi-Long Lee
Journal:  J Mol Model       Date:  2010-02-27       Impact factor: 1.810

9.  Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome C oxidase.

Authors:  Shuo Yang; Qiang Cui
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

10.  Redox-coupled proton pumping in cytochrome c oxidase: further insights from computer simulation.

Authors:  Jiancong Xu; Gregory A Voth
Journal:  Biochim Biophys Acta       Date:  2007-12-04
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