Literature DB >> 29712836

Local initiation conditions for water autoionization.

Mahmoud Moqadam1, Anders Lervik2, Enrico Riccardi1, Vishwesh Venkatraman1, Bjørn Kåre Alsberg1, Titus S van Erp2,3.   

Abstract

The pH of liquid water is determined by the infrequent process in which water molecules split into short-lived hydroxide and hydronium ions. This reaction is difficult to probe experimentally and challenging to simulate. One of the open questions is whether the local water structure around a slightly stretched OH bond is actually initiating the eventual breakage of this bond or whether this event is driven by a global ordering that involves many water molecules far away from the reaction center. Here, we investigated the self-ionization of water at room temperature by rare-event ab initio molecular dynamics and obtained autoionization rates and activation energies in good agreement with experiments. Based on the analysis of thousands of molecular trajectories, we identified a couple of local order parameters and show that if a bond stretch occurs when all these parameters are around their ideal range, the chance for the first dissociation step (double-proton jump) increases from [Formula: see text] to 0.4. Understanding these initiation triggers might ultimately allow the steering of chemical reactions.

Entities:  

Keywords:  ab initio molecular dynamics; autoionization; machine learning; path sampling; water

Year:  2018        PMID: 29712836      PMCID: PMC5960278          DOI: 10.1073/pnas.1714070115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Relationship between structural order and the anomalies of liquid water.

Authors:  J R Errington; P G Debenedetti
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

2.  Transmission Coefficients, Committors, and Solvent Coordinates in Ion-Pair Dissociation.

Authors:  Ryan Gotchy Mullen; Joan-Emma Shea; Baron Peters
Journal:  J Chem Theory Comput       Date:  2014-02-11       Impact factor: 6.006

3.  Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases.

Authors:  Joost VandeVondele; Jürg Hutter
Journal:  J Chem Phys       Date:  2007-09-21       Impact factor: 3.488

4.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

5.  Analyzing Complex Reaction Mechanisms Using Path Sampling.

Authors:  Titus S van Erp; Mahmoud Moqadam; Enrico Riccardi; Anders Lervik
Journal:  J Chem Theory Comput       Date:  2016-10-26       Impact factor: 6.006

6.  Ab initio molecular dynamics study of dissociation of water under an electric field.

Authors:  A Marco Saitta; Franz Saija; Paolo V Giaquinta
Journal:  Phys Rev Lett       Date:  2012-05-15       Impact factor: 9.161

7.  Mechanistic insights into the dissociation and decomposition of carbonic acid in water via the hydroxide route: an ab initio metadynamics study.

Authors:  Mirza Galib; Gabriel Hanna
Journal:  J Phys Chem B       Date:  2011-11-22       Impact factor: 2.991

8.  Ab initio molecular dynamics study of the mechanism of proton recombination with a weak base.

Authors:  Jérôme Cuny; Ali A Hassanali
Journal:  J Phys Chem B       Date:  2014-11-21       Impact factor: 2.991

9.  Hydrogen-bonding structure and dynamics of aqueous carbonate species from car-parrinello molecular dynamics simulations.

Authors:  P Padma Kumar; Andrey G Kalinichev; R James Kirkpatrick
Journal:  J Phys Chem B       Date:  2009-01-22       Impact factor: 2.991

Review 10.  Protons and Hydroxide Ions in Aqueous Systems.

Authors:  Noam Agmon; Huib J Bakker; R Kramer Campen; Richard H Henchman; Peter Pohl; Sylvie Roke; Martin Thämer; Ali Hassanali
Journal:  Chem Rev       Date:  2016-06-17       Impact factor: 60.622

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  6 in total

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Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

2.  Unveiling Zwitterionization of Glycine in the Microhydration Limit.

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Journal:  ACS Omega       Date:  2021-05-07

3.  Predicting the mechanism and rate of H-NS binding to AT-rich DNA.

Authors:  Enrico Riccardi; Eva C van Mastbergen; William Wiley Navarre; Jocelyne Vreede
Journal:  PLoS Comput Biol       Date:  2019-03-07       Impact factor: 4.475

4.  Ab Initio Molecular Dynamics Simulations of the Influence of Lithium Bromide Salt on the Deprotonation of Formic Acid in Aqueous Solution.

Authors:  Christopher D Daub; Lauri Halonen
Journal:  J Phys Chem B       Date:  2019-07-30       Impact factor: 2.991

5.  Computer Simulation of a Surface Charge Nanobiosensor with Internal Signal Integration.

Authors:  Dmitry Dyubo; Oleg Yu Tsybin
Journal:  Biosensors (Basel)       Date:  2021-10-16

6.  Effects of channel size, wall wettability, and electric field strength on ion removal from water in nanochannels.

Authors:  Filippos Sofos; Theodoros E Karakasidis; Ioannis E Sarris
Journal:  Sci Rep       Date:  2022-01-12       Impact factor: 4.379

  6 in total

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