Literature DB >> 23863808

Fast GCaMPs for improved tracking of neuronal activity.

Xiaonan R Sun1,2, Aleksandra Badura1,2, Diego A Pacheco1,2, Laura A Lynch1,2, Eve R Schneider1,2, Matthew P Taylor1,2, Ian B Hogue1,2, Lynn W Enquist1,2, Mala Murthy1,2, Samuel S-H Wang1,2.   

Abstract

The use of genetically encodable calcium indicator proteins to monitor neuronal activity is hampered by slow response times and a narrow Ca(2+)-sensitive range. Here we identify three performance-limiting features of GCaMP3, a popular genetically encodable calcium indicator protein. First, we find that affinity is regulated by the calmodulin domain's Ca(2+)-chelating residues. Second, we find that off-responses to Ca(2+) are rate-limited by dissociation of the RS20 domain from calmodulin's hydrophobic pocket. Third, we find that on-responses are limited by fast binding to the N-lobe at high Ca(2+) and by slow binding to the C-lobe at lower Ca(2+). We develop Fast-GCaMPs, which have up to 20-fold accelerated off-responses and show that they have a 200-fold range of K(D), allowing coexpression of multiple variants to span an expanded range of Ca(2+) concentrations. Finally, we show that Fast-GCaMPs track natural song in Drosophila auditory neurons and generate rapid responses in mammalian neurons, supporting the utility of our approach.

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Year:  2013        PMID: 23863808      PMCID: PMC3824390          DOI: 10.1038/ncomms3170

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  40 in total

1.  Structure/calcium affinity relationships of site III of calmodulin: testing the acid pair hypothesis using calmodulin mutants.

Authors:  X Wu; R E Reid
Journal:  Biochemistry       Date:  1997-07-15       Impact factor: 3.162

2.  Indicators based on fluorescence resonance energy transfer (FRET).

Authors:  Roger Y Tsien
Journal:  Cold Spring Harb Protoc       Date:  2009-07

3.  Culturing primary and transformed neuronal cells for studying pseudorabies virus infection.

Authors:  Toh Hean Ch'ng; E Alexander Flood; Lynn William Enquist
Journal:  Methods Mol Biol       Date:  2005

4.  Acid pairs increase the N-terminal Ca2+ affinity of CaM by increasing the rate of Ca2+ association.

Authors:  D J Black; S B Tikunova; J D Johnson; J P Davis
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

5.  Calmodulin-cardiac troponin C chimeras. Effects of domain exchange on calcium binding and enzyme activation.

Authors:  S E George; Z Su; D Fan; A R Means
Journal:  J Biol Chem       Date:  1993-11-25       Impact factor: 5.157

6.  Identification of amino acids essential for calmodulin binding and activation of smooth muscle myosin light chain kinase.

Authors:  I C Bagchi; Q H Huang; A R Means
Journal:  J Biol Chem       Date:  1992-02-15       Impact factor: 5.157

7.  Ca2+ binding kinetics of fura-2 and azo-1 from temperature-jump relaxation measurements.

Authors:  J P Kao; R Y Tsien
Journal:  Biophys J       Date:  1988-04       Impact factor: 4.033

8.  Spike timing dependent plasticity: a consequence of more fundamental learning rules.

Authors:  Harel Z Shouval; Samuel S-H Wang; Gayle M Wittenberg
Journal:  Front Comput Neurosci       Date:  2010-07-01       Impact factor: 2.380

9.  An improved genetically encoded red fluorescent Ca2+ indicator for detecting optically evoked action potentials.

Authors:  Masamichi Ohkura; Takuya Sasaki; Chiaki Kobayashi; Yuji Ikegaya; Junichi Nakai
Journal:  PLoS One       Date:  2012-07-10       Impact factor: 3.240

10.  ScanImage: flexible software for operating laser scanning microscopes.

Authors:  Thomas A Pologruto; Bernardo L Sabatini; Karel Svoboda
Journal:  Biomed Eng Online       Date:  2003-05-17       Impact factor: 2.819

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  59 in total

1.  Calcium sensors reach new heights.

Authors:  Erika Pastrana
Journal:  Nat Methods       Date:  2013-09       Impact factor: 28.547

2.  Long-term in vivo time-lapse imaging of synapse development and plasticity in the cerebellum.

Authors:  Naoko Nishiyama; Jeremy Colonna; Elise Shen; Jennifer Carrillo; Hiroshi Nishiyama
Journal:  J Neurophysiol       Date:  2013-10-16       Impact factor: 2.714

3.  Physical principles for scalable neural recording.

Authors:  Adam H Marblestone; Bradley M Zamft; Yael G Maguire; Mikhail G Shapiro; Thaddeus R Cybulski; Joshua I Glaser; Dario Amodei; P Benjamin Stranges; Reza Kalhor; David A Dalrymple; Dongjin Seo; Elad Alon; Michel M Maharbiz; Jose M Carmena; Jan M Rabaey; Edward S Boyden; George M Church; Konrad P Kording
Journal:  Front Comput Neurosci       Date:  2013-10-21       Impact factor: 2.380

4.  The GCaMP-R Family of Genetically Encoded Ratiometric Calcium Indicators.

Authors:  Jung-Hwa Cho; Carter J Swanson; Jeannie Chen; Ang Li; Lisa G Lippert; Shannon E Boye; Kasey Rose; Sivaraj Sivaramakrishnan; Cheng-Ming Chuong; Robert H Chow
Journal:  ACS Chem Biol       Date:  2017-03-01       Impact factor: 5.100

Review 5.  Optical Probes for Neurobiological Sensing and Imaging.

Authors:  Eric H Kim; Gregory Chin; Guoxin Rong; Kira E Poskanzer; Heather A Clark
Journal:  Acc Chem Res       Date:  2018-04-13       Impact factor: 22.384

Review 6.  Imaging with organic indicators and high-speed charge-coupled device cameras in neurons: some applications where these classic techniques have advantages.

Authors:  William N Ross; Kenichi Miyazaki; Marko A Popovic; Dejan Zecevic
Journal:  Neurophotonics       Date:  2014-12-22       Impact factor: 3.593

7.  Transcriptional readout of neuronal activity via an engineered Ca2+-activated protease.

Authors:  Mateo I Sanchez; Quynh-Anh Nguyen; Wenjing Wang; Ivan Soltesz; Alice Y Ting
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-15       Impact factor: 11.205

8.  Characterizing Cortex-Wide Dynamics with Wide-Field Calcium Imaging.

Authors:  Chi Ren; Takaki Komiyama
Journal:  J Neurosci       Date:  2021-04-23       Impact factor: 6.167

Review 9.  Genetically encoded indicators of neuronal activity.

Authors:  Michael Z Lin; Mark J Schnitzer
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

Review 10.  Fast kinetics of calcium signaling and sensor design.

Authors:  Shen Tang; Florence Reddish; You Zhuo; Jenny J Yang
Journal:  Curr Opin Chem Biol       Date:  2015-07-04       Impact factor: 8.822

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