Literature DB >> 27571193

Genetically encoded indicators of neuronal activity.

Michael Z Lin1,2, Mark J Schnitzer3,4,5.   

Abstract

Experimental efforts to understand how the brain represents, stores and processes information require high-fidelity recordings of multiple different forms of neural activity within functional circuits. Thus, creating improved technologies for large-scale recordings of neural activity in the live brain is a crucial goal in neuroscience. Over the past two decades, the combination of optical microscopy and genetically encoded fluorescent indicators has become a widespread means of recording neural activity in non<span class="Species">mammalian and <span class="Species">mammalian nervous systems, transforming brain research in the process. In this review, we describe and assess different classes of fluorescent protein indicators of neural activity. We first discuss general considerations in optical imaging and then present salient characteristics of representative indicators. Our focus is on how indicator characteristics relate to their use in living animals and on likely areas of future progress.

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Year:  2016        PMID: 27571193      PMCID: PMC5557009          DOI: 10.1038/nn.4359

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  144 in total

1.  Brain-wide neuronal dynamics during motor adaptation in zebrafish.

Authors:  Misha B Ahrens; Jennifer M Li; Michael B Orger; Drew N Robson; Alexander F Schier; Florian Engert; Ruben Portugues
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

Review 2.  A structural classification of substrate-binding proteins.

Authors:  Ronnie P-A Berntsson; Sander H J Smits; Lutz Schmitt; Dirk-Jan Slotboom; Bert Poolman
Journal:  FEBS Lett       Date:  2010-04-20       Impact factor: 4.124

Review 3.  Visualizing presynaptic function.

Authors:  Ege T Kavalali; Erik M Jorgensen
Journal:  Nat Neurosci       Date:  2013-12-26       Impact factor: 24.884

Review 4.  Molecular spies for bioimaging--fluorescent protein-based probes.

Authors:  Atsushi Miyawaki; Yusuke Niino
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

5.  Imaging neural spiking in brain tissue using FRET-opsin protein voltage sensors.

Authors:  Yiyang Gong; Mark J Wagner; Jin Zhong Li; Mark J Schnitzer
Journal:  Nat Commun       Date:  2014-04-22       Impact factor: 14.919

6.  Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo.

Authors:  Helen H Yang; François St-Pierre; Xulu Sun; Xiaozhe Ding; Michael Z Lin; Thomas R Clandinin
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

7.  High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.

Authors:  François St-Pierre; Jesse D Marshall; Ying Yang; Yiyang Gong; Mark J Schnitzer; Michael Z Lin
Journal:  Nat Neurosci       Date:  2014-04-22       Impact factor: 24.884

8.  A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo.

Authors:  Jun Chu; Younghee Oh; Alex Sens; Niloufar Ataie; Hod Dana; John J Macklin; Tal Laviv; Erik S Welf; Kevin M Dean; Feijie Zhang; Benjamin B Kim; Clement Tran Tang; Michelle Hu; Michelle A Baird; Michael W Davidson; Mark A Kay; Reto Fiolka; Ryohei Yasuda; Douglas S Kim; Ho-Leung Ng; Michael Z Lin
Journal:  Nat Biotechnol       Date:  2016-05-30       Impact factor: 54.908

9.  Highlighted Ca²⁺ imaging with a genetically encoded 'caged' indicator.

Authors:  Tomoki Matsuda; Kazuki Horikawa; Kenta Saito; Takeharu Nagai
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Long-term dynamics of CA1 hippocampal place codes.

Authors:  Yaniv Ziv; Laurie D Burns; Eric D Cocker; Elizabeth O Hamel; Kunal K Ghosh; Lacey J Kitch; Abbas El Gamal; Mark J Schnitzer
Journal:  Nat Neurosci       Date:  2013-02-10       Impact factor: 24.884

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  217 in total

1.  Hemodynamic and neuronal responses to cocaine differ in awake versus anesthetized animals: Optical brain imaging study.

Authors:  Kicheon Park; Wei Chen; Nora D Volkow; Craig P Allen; Yingtian Pan; Congwu Du
Journal:  Neuroimage       Date:  2018-12-01       Impact factor: 6.556

Review 2.  Probes for monitoring regulated exocytosis.

Authors:  Wen-Hong Li
Journal:  Cell Calcium       Date:  2017-01-09       Impact factor: 6.817

Review 3.  Live-cell imaging of cell signaling using genetically encoded fluorescent reporters.

Authors:  Qiang Ni; Sohum Mehta; Jin Zhang
Journal:  FEBS J       Date:  2017-07-06       Impact factor: 5.542

4.  Spying on Neuronal Membrane Potential with Genetically Targetable Voltage Indicators.

Authors:  Vincent Grenier; Brittany R Daws; Pei Liu; Evan W Miller
Journal:  J Am Chem Soc       Date:  2019-01-10       Impact factor: 15.419

Review 5.  A Guide to Emerging Technologies for Large-Scale and Whole-Brain Optical Imaging of Neuronal Activity.

Authors:  Siegfried Weisenburger; Alipasha Vaziri
Journal:  Annu Rev Neurosci       Date:  2018-04-25       Impact factor: 12.449

Review 6.  WONOEP appraisal: Network concept from an imaging perspective.

Authors:  Robert C Wykes; Hui Ming Khoo; Lorenzo Caciagli; Hal Blumenfeld; Peyman Golshani; Jaideep Kapur; John M Stern; Andrea Bernasconi; Stefanie Dedeurwaerdere; Neda Bernasconi
Journal:  Epilepsia       Date:  2019-06-09       Impact factor: 5.864

Review 7.  Cell death assays for neurodegenerative disease drug discovery.

Authors:  Jeremy W Linsley; Terry Reisine; Steven Finkbeiner
Journal:  Expert Opin Drug Discov       Date:  2019-06-10       Impact factor: 6.098

8.  In Vivo Biosensing: Progress and Perspectives.

Authors:  Guoxin Rong; Simon R Corrie; Heather A Clark
Journal:  ACS Sens       Date:  2017-02-24       Impact factor: 7.711

Review 9.  Nongenetic Optical Methods for Measuring and Modulating Neuronal Response.

Authors:  John F Zimmerman; Bozhi Tian
Journal:  ACS Nano       Date:  2018-05-04       Impact factor: 15.881

10.  Presynaptic loss of dynamin-related protein 1 impairs synaptic vesicle release and recycling at the mouse calyx of Held.

Authors:  Mahendra Singh; Henry Denny; Christina Smith; Jorge Granados; Robert Renden
Journal:  J Physiol       Date:  2018-11-10       Impact factor: 5.182

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