Literature DB >> 23846243

New sequencing technologies.

Ivo Glynne Gut1.   

Abstract

Nucleic acid sequencing is one of the most important tools of biological research with very broad application. Four generations of DNA sequencing technologies can be distinguished by their nature and the kind of output they provide. Sanger sequencing dominated for 30 years and was the workhorse of the Human Genome Project. In 2005 the first 2nd generation sequencer was presented with an output orders of magnitude higher than Sanger sequencing and dramatically reduced cost per base. Currently, we are at the dawn of third generation with nanopore systems that are being developed for DNA sequencing. Meanwhile, the field is broadening applications that complement first, second and third generation sequencing systems to get high-resolution genetic information and fourth generation sequencing is on the horizon. Second generation nucleic acid sequencers are systematically applied in many large-scale international projects such as the International Cancer Genome Consortium and the International Human Epigenome Project.

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Year:  2013        PMID: 23846243     DOI: 10.1007/s12094-013-1073-6

Source DB:  PubMed          Journal:  Clin Transl Oncol        ISSN: 1699-048X            Impact factor:   3.405


  14 in total

Review 1.  A window into third-generation sequencing.

Authors:  Eric E Schadt; Steve Turner; Andrew Kasarskis
Journal:  Hum Mol Genet       Date:  2010-09-21       Impact factor: 6.150

Review 2.  High-throughput DNA sequencing--concepts and limitations.

Authors:  Martin Kircher; Janet Kelso
Journal:  Bioessays       Date:  2010-06       Impact factor: 4.345

3.  In situ detection and genotyping of individual mRNA molecules.

Authors:  Chatarina Larsson; Ida Grundberg; Ola Söderberg; Mats Nilsson
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

4.  Continuous base identification for single-molecule nanopore DNA sequencing.

Authors:  James Clarke; Hai-Chen Wu; Lakmal Jayasinghe; Alpesh Patel; Stuart Reid; Hagan Bayley
Journal:  Nat Nanotechnol       Date:  2009-02-22       Impact factor: 39.213

5.  An integrated semiconductor device enabling non-optical genome sequencing.

Authors:  Jonathan M Rothberg; Wolfgang Hinz; Todd M Rearick; Jonathan Schultz; William Mileski; Mel Davey; John H Leamon; Kim Johnson; Mark J Milgrew; Matthew Edwards; Jeremy Hoon; Jan F Simons; David Marran; Jason W Myers; John F Davidson; Annika Branting; John R Nobile; Bernard P Puc; David Light; Travis A Clark; Martin Huber; Jeffrey T Branciforte; Isaac B Stoner; Simon E Cawley; Michael Lyons; Yutao Fu; Nils Homer; Marina Sedova; Xin Miao; Brian Reed; Jeffrey Sabina; Erika Feierstein; Michelle Schorn; Mohammad Alanjary; Eileen Dimalanta; Devin Dressman; Rachel Kasinskas; Tanya Sokolsky; Jacqueline A Fidanza; Eugeni Namsaraev; Kevin J McKernan; Alan Williams; G Thomas Roth; James Bustillo
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

Review 6.  Sequencing technologies - the next generation.

Authors:  Michael L Metzker
Journal:  Nat Rev Genet       Date:  2009-12-08       Impact factor: 53.242

7.  Finishing the euchromatic sequence of the human genome.

Authors: 
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

8.  A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Authors:  Anton Valouev; Jeffrey Ichikawa; Thaisan Tonthat; Jeremy Stuart; Swati Ranade; Heather Peckham; Kathy Zeng; Joel A Malek; Gina Costa; Kevin McKernan; Arend Sidow; Andrew Fire; Steven M Johnson
Journal:  Genome Res       Date:  2008-05-13       Impact factor: 9.043

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Real-time DNA sequencing from single polymerase molecules.

Authors:  John Eid; Adrian Fehr; Jeremy Gray; Khai Luong; John Lyle; Geoff Otto; Paul Peluso; David Rank; Primo Baybayan; Brad Bettman; Arkadiusz Bibillo; Keith Bjornson; Bidhan Chaudhuri; Frederick Christians; Ronald Cicero; Sonya Clark; Ravindra Dalal; Alex Dewinter; John Dixon; Mathieu Foquet; Alfred Gaertner; Paul Hardenbol; Cheryl Heiner; Kevin Hester; David Holden; Gregory Kearns; Xiangxu Kong; Ronald Kuse; Yves Lacroix; Steven Lin; Paul Lundquist; Congcong Ma; Patrick Marks; Mark Maxham; Devon Murphy; Insil Park; Thang Pham; Michael Phillips; Joy Roy; Robert Sebra; Gene Shen; Jon Sorenson; Austin Tomaney; Kevin Travers; Mark Trulson; John Vieceli; Jeffrey Wegener; Dawn Wu; Alicia Yang; Denis Zaccarin; Peter Zhao; Frank Zhong; Jonas Korlach; Stephen Turner
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

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  10 in total

1.  Genomic Profiling of HER2-Positive Gastric Cancer: PI3K/Akt/mTOR Pathway as Predictor of Outcomes in HER2-Positive Advanced Gastric Cancer Treated with Trastuzumab.

Authors:  Asunción Díaz-Serrano; Barbara Angulo; Carolina Dominguez; Roberto Pazo-Cid; Antonieta Salud; Paula Jiménez-Fonseca; Ana Leon; Maria Carmen Galan; Maria Alsina; Fernando Rivera; J Carlos Plaza; Luis Paz-Ares; Fernando Lopez-Rios; Carlos Gómez-Martín
Journal:  Oncologist       Date:  2018-04-26

Review 2.  Shifts of microbiota during cheese production: impact on production and quality.

Authors:  Jun Haeng Nam; Yong Sun Cho; Bryna Rackerby; Lisbeth Goddik; Si Hong Park
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-04       Impact factor: 4.813

3.  Mechanotransduction Mechanisms for Intraventricular Diastolic Vortex Forces and Myocardial Deformations: Part 2.

Authors:  Ares Pasipoularides
Journal:  J Cardiovasc Transl Res       Date:  2015-05-14       Impact factor: 4.132

4.  De novo transcriptome assembly, gene annotation, marker development, and miRNA potential target genes validation under abiotic stresses in Oenanthe javanica.

Authors:  Qian Jiang; Feng Wang; Hua-Wei Tan; Meng-Yao Li; Zhi-Sheng Xu; Guo-Fei Tan; Ai-Sheng Xiong
Journal:  Mol Genet Genomics       Date:  2014-11-22       Impact factor: 3.291

5.  Diabetes and cardiovascular disease: let's push forward with translational research.

Authors:  Francesco Paneni; Sarah Costantino
Journal:  Cardiovasc Diagn Ther       Date:  2015-10

Review 6.  RD-Connect: an integrated platform connecting databases, registries, biobanks and clinical bioinformatics for rare disease research.

Authors:  Rachel Thompson; Louise Johnston; Domenica Taruscio; Lucia Monaco; Christophe Béroud; Ivo G Gut; Mats G Hansson; Peter-Bram A 't Hoen; George P Patrinos; Hugh Dawkins; Monica Ensini; Kurt Zatloukal; David Koubi; Emma Heslop; Justin E Paschall; Manuel Posada; Peter N Robinson; Kate Bushby; Hanns Lochmüller
Journal:  J Gen Intern Med       Date:  2014-08       Impact factor: 5.128

Review 7.  Opening up the DNA methylome of dementia.

Authors:  R Delgado-Morales; M Esteller
Journal:  Mol Psychiatry       Date:  2017-01-03       Impact factor: 15.992

Review 8.  Monitoring biodiversity in libraries: a pilot study and perspectives for indoor air quality.

Authors:  F Valeriani; C Cianfanelli; G Gianfranceschi; S Santucci; V Romano Spica; N Mucci
Journal:  J Prev Med Hyg       Date:  2017-09

Review 9.  The Genetics of Treatment-Resistant Depression: A Critical Review and Future Perspectives.

Authors:  Chiara Fabbri; Filippo Corponi; Daniel Souery; Siegfried Kasper; Stuart Montgomery; Joseph Zohar; Dan Rujescu; Julien Mendlewicz; Alessandro Serretti
Journal:  Int J Neuropsychopharmacol       Date:  2019-02-01       Impact factor: 5.176

Review 10.  The sequence of sequencers: The history of sequencing DNA.

Authors:  James M Heather; Benjamin Chain
Journal:  Genomics       Date:  2015-11-10       Impact factor: 5.736

  10 in total

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