Literature DB >> 20858600

A window into third-generation sequencing.

Eric E Schadt1, Steve Turner, Andrew Kasarskis.   

Abstract

First- and second-generation sequencing technologies have led the way in revolutionizing the field of genomics and beyond, motivating an astonishing number of scientific advances, including enabling a more complete understanding of whole genome sequences and the information encoded therein, a more complete characterization of the methylome and transcriptome and a better understanding of interactions between proteins and DNA. Nevertheless, there are sequencing applications and aspects of genome biology that are presently beyond the reach of current sequencing technologies, leaving fertile ground for additional innovation in this space. In this review, we describe a new generation of single-molecule sequencing technologies (third-generation sequencing) that is emerging to fill this space, with the potential for dramatically longer read lengths, shorter time to result and lower overall cost.

Mesh:

Year:  2010        PMID: 20858600     DOI: 10.1093/hmg/ddq416

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  222 in total

1.  DNA base-specific modulation of microampere transverse edge currents through a metallic graphene nanoribbon with a nanopore.

Authors:  Kamal K Saha; Marija Drndić; Branislav K Nikolić
Journal:  Nano Lett       Date:  2011-12-15       Impact factor: 11.189

2.  Next-generation sequencing for cancer diagnostics: a practical perspective.

Authors:  Cliff Meldrum; Maria A Doyle; Richard W Tothill
Journal:  Clin Biochem Rev       Date:  2011-11

3.  Advances in biotechnology and linking outputs to variation in complex traits: Plant and Animal Genome meeting January 2012.

Authors:  R Appels; R Barrero; M Bellgard
Journal:  Funct Integr Genomics       Date:  2012-02-22       Impact factor: 3.410

Review 4.  Exploring giant plant genomes with next-generation sequencing technology.

Authors:  Laura J Kelly; Ilia J Leitch
Journal:  Chromosome Res       Date:  2011-10       Impact factor: 5.239

Review 5.  Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory.

Authors:  W M Dunne; L F Westblade; B Ford
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2012-06-08       Impact factor: 3.267

6.  RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression.

Authors:  Emilie Lalonde; Kevin C H Ha; Zibo Wang; Amandine Bemmo; Claudia L Kleinman; Tony Kwan; Tomi Pastinen; Jacek Majewski
Journal:  Genome Res       Date:  2010-12-20       Impact factor: 9.043

Review 7.  Computational tools for discovery and interpretation of expression quantitative trait loci.

Authors:  Fred A Wright; Andrey A Shabalin; Ivan Rusyn
Journal:  Pharmacogenomics       Date:  2012-02       Impact factor: 2.533

8.  PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers.

Authors:  Alejandro Q Nato; Nicola H Chapman; Harkirat K Sohi; Hiep D Nguyen; Zoran Brkanac; Ellen M Wijsman
Journal:  Bioinformatics       Date:  2015-07-30       Impact factor: 6.937

Review 9.  Next-generation sequencing in clinical virology: Discovery of new viruses.

Authors:  Sibnarayan Datta; Raghvendra Budhauliya; Bidisha Das; Soumya Chatterjee; Vijay Veer
Journal:  World J Virol       Date:  2015-08-12

10.  Tunable graphene quantum point contact transistor for DNA detection and characterization.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Nanotechnology       Date:  2015-03-13       Impact factor: 3.874

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