Literature DB >> 25029978

RD-Connect: an integrated platform connecting databases, registries, biobanks and clinical bioinformatics for rare disease research.

Rachel Thompson1, Louise Johnston, Domenica Taruscio, Lucia Monaco, Christophe Béroud, Ivo G Gut, Mats G Hansson, Peter-Bram A 't Hoen, George P Patrinos, Hugh Dawkins, Monica Ensini, Kurt Zatloukal, David Koubi, Emma Heslop, Justin E Paschall, Manuel Posada, Peter N Robinson, Kate Bushby, Hanns Lochmüller.   

Abstract

Research into rare diseases is typically fragmented by data type and disease. Individual efforts often have poor interoperability and do not systematically connect data across clinical phenotype, genomic data, biomaterial availability, and research/trial data sets. Such data must be linked at both an individual-patient and whole-cohort level to enable researchers to gain a complete view of their disease and patient population of interest. Data access and authorization procedures are required to allow researchers in multiple institutions to securely compare results and gain new insights. Funded by the European Union's Seventh Framework Programme under the International Rare Diseases Research Consortium (IRDiRC), RD-Connect is a global infrastructure project initiated in November 2012 that links genomic data with registries, biobanks, and clinical bioinformatics tools to produce a central research resource for rare diseases.

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Mesh:

Year:  2014        PMID: 25029978      PMCID: PMC4124112          DOI: 10.1007/s11606-014-2908-8

Source DB:  PubMed          Journal:  J Gen Intern Med        ISSN: 0884-8734            Impact factor:   5.128


  33 in total

1.  Open to interpretation.

Authors: 
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

2.  Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

Authors:  Peter A C 't Hoen; Marc R Friedländer; Jonas Almlöf; Michael Sammeth; Irina Pulyakhina; Seyed Yahya Anvar; Jeroen F J Laros; Henk P J Buermans; Olof Karlberg; Mathias Brännvall; Johan T den Dunnen; Gert-Jan B van Ommen; Ivo G Gut; Roderic Guigó; Xavier Estivill; Ann-Christine Syvänen; Emmanouil T Dermitzakis; Tuuli Lappalainen
Journal:  Nat Biotechnol       Date:  2013-09-15       Impact factor: 54.908

3.  Collaborating to bring new therapies to the patient--the TREAT-NMD model.

Authors:  K Bushby; S Lynn; T Straub
Journal:  Acta Myol       Date:  2009-07

4.  DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.

Authors:  Helen V Firth; Shola M Richards; A Paul Bevan; Stephen Clayton; Manuel Corpas; Diana Rajan; Steven Van Vooren; Yves Moreau; Roger M Pettett; Nigel P Carter
Journal:  Am J Hum Genet       Date:  2009-04-02       Impact factor: 11.025

5.  Genotype-phenotype analysis in 2,405 patients with a dystrophinopathy using the UMD-DMD database: a model of nationwide knowledgebase.

Authors:  Sylvie Tuffery-Giraud; Christophe Béroud; France Leturcq; Rabah Ben Yaou; Dalil Hamroun; Laurence Michel-Calemard; Marie-Pierre Moizard; Rafaëlle Bernard; Mireille Cossée; Pierre Boisseau; Martine Blayau; Isabelle Creveaux; Anne Guiochon-Mantel; Bérengère de Martinville; Christophe Philippe; Nicole Monnier; Eric Bieth; Philippe Khau Van Kien; François-Olivier Desmet; Véronique Humbertclaude; Jean-Claude Kaplan; Jamel Chelly; Mireille Claustres
Journal:  Hum Mutat       Date:  2009-06       Impact factor: 4.878

6.  Predictors of phenotypic progression and disease onset in premanifest and early-stage Huntington's disease in the TRACK-HD study: analysis of 36-month observational data.

Authors:  Sarah J Tabrizi; Rachael I Scahill; Gail Owen; Alexandra Durr; Blair R Leavitt; Raymund A Roos; Beth Borowsky; Bernhard Landwehrmeyer; Chris Frost; Hans Johnson; David Craufurd; Ralf Reilmann; Julie C Stout; Douglas R Langbehn
Journal:  Lancet Neurol       Date:  2013-05-09       Impact factor: 44.182

7.  PhenoTips: patient phenotyping software for clinical and research use.

Authors:  Marta Girdea; Sergiu Dumitriu; Marc Fiume; Sarah Bowdin; Kym M Boycott; Sébastien Chénier; David Chitayat; Hanna Faghfoury; M Stephen Meyn; Peter N Ray; Joyce So; Dimitri J Stavropoulos; Michael Brudno
Journal:  Hum Mutat       Date:  2013-05-24       Impact factor: 4.878

8.  Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.

Authors:  Marco Roos; M Scott Marshall; Andrew P Gibson; Martijn Schuemie; Edgar Meij; Sophia Katrenko; Willem Robert van Hage; Konstantinos Krommydas; Pieter W Adriaans
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

9.  COEUS: "semantic web in a box" for biomedical applications.

Authors:  Pedro Lopes; José Luís Oliveira
Journal:  J Biomed Semantics       Date:  2012-12-17

10.  The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Authors:  Sebastian Köhler; Sandra C Doelken; Christopher J Mungall; Sebastian Bauer; Helen V Firth; Isabelle Bailleul-Forestier; Graeme C M Black; Danielle L Brown; Michael Brudno; Jennifer Campbell; David R FitzPatrick; Janan T Eppig; Andrew P Jackson; Kathleen Freson; Marta Girdea; Ingo Helbig; Jane A Hurst; Johanna Jähn; Laird G Jackson; Anne M Kelly; David H Ledbetter; Sahar Mansour; Christa L Martin; Celia Moss; Andrew Mumford; Willem H Ouwehand; Soo-Mi Park; Erin Rooney Riggs; Richard H Scott; Sanjay Sisodiya; Steven Van Vooren; Ronald J Wapner; Andrew O M Wilkie; Caroline F Wright; Anneke T Vulto-van Silfhout; Nicole de Leeuw; Bert B A de Vries; Nicole L Washingthon; Cynthia L Smith; Monte Westerfield; Paul Schofield; Barbara J Ruef; Georgios V Gkoutos; Melissa Haendel; Damian Smedley; Suzanna E Lewis; Peter N Robinson
Journal:  Nucleic Acids Res       Date:  2013-11-11       Impact factor: 16.971

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  74 in total

Review 1.  Human genotype-phenotype databases: aims, challenges and opportunities.

Authors:  Anthony J Brookes; Peter N Robinson
Journal:  Nat Rev Genet       Date:  2015-11-10       Impact factor: 53.242

2.  Innovative genomic collaboration using the GENESIS (GEM.app) platform.

Authors:  Michael Gonzalez; Marni J Falk; Xiaowu Gai; Richard Postrel; Rebecca Schüle; Stephan Zuchner
Journal:  Hum Mutat       Date:  2015-08-12       Impact factor: 4.878

3.  Mutation-specific pathophysiological mechanisms define different neurodevelopmental disorders associated with SATB1 dysfunction.

Authors:  Joery den Hoed; Elke de Boer; Norine Voisin; Alexander J M Dingemans; Nicolas Guex; Laurens Wiel; Christoffer Nellaker; Shivarajan M Amudhavalli; Siddharth Banka; Frederique S Bena; Bruria Ben-Zeev; Vincent R Bonagura; Ange-Line Bruel; Theresa Brunet; Han G Brunner; Hui B Chew; Jacqueline Chrast; Loreta Cimbalistienė; Hilary Coon; Emmanuèlle C Délot; Florence Démurger; Anne-Sophie Denommé-Pichon; Christel Depienne; Dian Donnai; David A Dyment; Orly Elpeleg; Laurence Faivre; Christian Gilissen; Leslie Granger; Benjamin Haber; Yasuo Hachiya; Yasmin Hamzavi Abedi; Jennifer Hanebeck; Jayne Y Hehir-Kwa; Brooke Horist; Toshiyuki Itai; Adam Jackson; Rosalyn Jewell; Kelly L Jones; Shelagh Joss; Hirofumi Kashii; Mitsuhiro Kato; Anja A Kattentidt-Mouravieva; Fernando Kok; Urania Kotzaeridou; Vidya Krishnamurthy; Vaidutis Kučinskas; Alma Kuechler; Alinoë Lavillaureix; Pengfei Liu; Linda Manwaring; Naomichi Matsumoto; Benoît Mazel; Kirsty McWalter; Vardiella Meiner; Mohamad A Mikati; Satoko Miyatake; Takeshi Mizuguchi; Lip H Moey; Shehla Mohammed; Hagar Mor-Shaked; Hayley Mountford; Ruth Newbury-Ecob; Sylvie Odent; Laura Orec; Matthew Osmond; Timothy B Palculict; Michael Parker; Andrea K Petersen; Rolph Pfundt; Eglė Preikšaitienė; Kelly Radtke; Emmanuelle Ranza; Jill A Rosenfeld; Teresa Santiago-Sim; Caitlin Schwager; Margje Sinnema; Lot Snijders Blok; Rebecca C Spillmann; Alexander P A Stegmann; Isabelle Thiffault; Linh Tran; Adi Vaknin-Dembinsky; Juliana H Vedovato-Dos-Santos; Samantha A Schrier Vergano; Eric Vilain; Antonio Vitobello; Matias Wagner; Androu Waheeb; Marcia Willing; Britton Zuccarelli; Usha Kini; Dianne F Newbury; Tjitske Kleefstra; Alexandre Reymond; Simon E Fisher; Lisenka E L M Vissers
Journal:  Am J Hum Genet       Date:  2021-01-28       Impact factor: 11.025

4.  SCALEUS: Semantic Web Services Integration for Biomedical Applications.

Authors:  Pedro Sernadela; Lorena González-Castro; José Luís Oliveira
Journal:  J Med Syst       Date:  2017-02-18       Impact factor: 4.460

Review 5.  National information system for rare diseases with an approach to data architecture: A systematic review.

Authors:  Simin Derayeh; Alireza Kazemi; Reza Rabiei; Azamossadat Hosseini; Hamid Moghaddasi
Journal:  Intractable Rare Dis Res       Date:  2018-08

Review 6.  The Italian National Centre for Rare Diseases: where research and public health translate into action.

Authors:  Domenica Taruscio; Linda Agresta; Annalisa Amato; Giuseppe Bernardo; Luana Bernardo; Francesca Braguti; Pietro Carbone; Claudio Carta; Marina Ceccarini; Federica Censi; Simona Coppola; Patrizia Crialese; Marta De Santis; Stefano Diemoz; Carlo Donati; Sabina Gainotti; Gianluca Ferrari; Giovanna Floridia; Claudio Frank; Rosa Giuseppa Frazzica; Amalia E Gentile; Orietta Granata; Yllka Kodra; Manuela Latrofa; Paola Laricchiuta; Armando Magrelli; Cristina Morciano; Agata Polizzi; Stefania Razeto; Marco Salvatore; Antonella Sanseverino; Daniele Savini; Paola Torreri; Fabrizio Tosto; Flavia Villani; Giorgio Vincenti; Luciano Vittozzi
Journal:  Blood Transfus       Date:  2014-04       Impact factor: 3.443

7.  Registry Contributions to Strengthen Cell and Gene Therapeutic Evidence.

Authors:  Mohamed Abou-El-Enein; David W Grainger; Sven Kili
Journal:  Mol Ther       Date:  2018-04-21       Impact factor: 11.454

Review 8.  Limb-girdle muscular dystrophies - international collaborations for translational research.

Authors:  Rachel Thompson; Volker Straub
Journal:  Nat Rev Neurol       Date:  2016-04-01       Impact factor: 42.937

9.  Preferences for Accessing Electronic Health Records for Research Purposes: Views of Parents Who Have a Child With a Known or Suspected Genetic Condition.

Authors:  Melissa Raspa; Ryan S Paquin; Derek S Brown; Sara Andrews; Anne Edwards; Rebecca Moultrie; Laura Wagner; MaryKate Frisch; Lauren Turner-Brown; Anne C Wheeler
Journal:  Value Health       Date:  2020-10-26       Impact factor: 5.725

10.  215th ENMC International Workshop VCP-related multi-system proteinopathy (IBMPFD) 13-15 November 2015, Heemskerk, The Netherlands.

Authors:  Teresinha Evangelista; Conrad C Weihl; Virginia Kimonis; Hanns Lochmüller
Journal:  Neuromuscul Disord       Date:  2016-05-30       Impact factor: 4.296

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