Literature DB >> 23833191

Formation of Arabidopsis Cryptochrome 2 photobodies in mammalian nuclei: application as an optogenetic DNA damage checkpoint switch.

Irem Ozkan-Dagliyan1, Yi-Ying Chiou, Rui Ye, Bachar H Hassan, Nuri Ozturk, Aziz Sancar.   

Abstract

Nuclear bodies are discrete suborganelle structures that perform specialized functions in eukaryotic cells. In plant cells, light can induce de novo formation of nuclear bodies called photobodies (PBs) composed of the photosensory pigments, phytochrome (PHY) or cryptochrome (CRY). The mechanisms of formation, the exact compositions, and the functions of plant PBs are not known. Here, we have expressed Arabidopsis CRY2 (AtCRY2) in mammalian cells and analyzed its fate after blue light exposure to understand the requirements for PB formation, the functions of PBs, and their potential use in cell biology. We found that light efficiently induces AtCRY2-PB formation in mammalian cells, indicating that, other than AtCRY2, no plant-specific proteins or nucleic acids are required for AtCRY2-PB formation. Irradiation of AtCRY2 led to its degradation; however, degradation was not dependent upon photobody formation. Furthermore, we found that AtCRY2 photobody formation is associated with light-stimulated interaction with mammalian COP1 E3 ligase. Finally, we demonstrate that by fusing AtCRY2 to the TopBP1 DNA damage checkpoint protein, light-induced AtCRY2 PBs can be used to activate DNA damage signaling pathway in the absence of DNA damage.

Entities:  

Keywords:  ATR; Checkpoint Control; Chk1; Cryptochrome; DNA Damage; FAD; Nuclear Bodies; Nucleus; Photoreceptors; TopBP1

Mesh:

Substances:

Year:  2013        PMID: 23833191      PMCID: PMC3743496          DOI: 10.1074/jbc.M113.493361

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

Review 1.  Biogenesis of nuclear bodies.

Authors:  Miroslav Dundr; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-11-10       Impact factor: 10.005

2.  A study of the blue-light-dependent phosphorylation, degradation, and photobody formation of Arabidopsis CRY2.

Authors:  Ze-Cheng Zuo; Ying-Ying Meng; Xu-Hong Yu; Zeng-Lin Zhang; De-Shun Feng; Shih-Fan Sun; Bin Liu; Chen-Tao Lin
Journal:  Mol Plant       Date:  2012-02-06       Impact factor: 13.164

3.  TopBP1 activates the ATR-ATRIP complex.

Authors:  Akiko Kumagai; Joon Lee; Hae Yong Yoo; William G Dunphy
Journal:  Cell       Date:  2006-03-10       Impact factor: 41.582

4.  Blue-light-dependent interaction of cryptochrome 1 with SPA1 defines a dynamic signaling mechanism.

Authors:  Hong-Li Lian; Sheng-Bo He; Yan-Chun Zhang; Dan-Meng Zhu; Jing-Yi Zhang; Kun-Peng Jia; Shu-Xia Sun; Ling Li; Hong-Quan Yang
Journal:  Genes Dev       Date:  2011-04-21       Impact factor: 11.361

Review 5.  The action mechanisms of plant cryptochromes.

Authors:  Hongtao Liu; Bin Liu; Chenxi Zhao; Michael Pepper; Chentao Lin
Journal:  Trends Plant Sci       Date:  2011-10-07       Impact factor: 18.313

6.  Evidence for functional conservation of a mammalian homologue of the light-responsive plant protein COP1.

Authors:  H Wang; D Kang; X W Deng; N Wei
Journal:  Curr Biol       Date:  1999-07-01       Impact factor: 10.834

Review 7.  Phytochrome signaling mechanisms and the control of plant development.

Authors:  Meng Chen; Joanne Chory
Journal:  Trends Cell Biol       Date:  2011-08-17       Impact factor: 20.808

Review 8.  Optical control of neuronal activity.

Authors:  Stephanie Szobota; Ehud Y Isacoff
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

9.  Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes.

Authors:  Meng Chen; Rafaelo M Galvão; Meina Li; Brian Burger; Jane Bugea; Jack Bolado; Joanne Chory
Journal:  Cell       Date:  2010-06-25       Impact factor: 41.582

10.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

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  21 in total

Review 1.  Algal photoreceptors: in vivo functions and potential applications.

Authors:  Arash Kianianmomeni; Armin Hallmann
Journal:  Planta       Date:  2013-10-01       Impact factor: 4.116

2.  Mechanisms of Cryptochrome-Mediated Photoresponses in Plants.

Authors:  Qin Wang; Chentao Lin
Journal:  Annu Rev Plant Biol       Date:  2020-03-13       Impact factor: 26.379

3.  Photoactivation and inactivation of Arabidopsis cryptochrome 2.

Authors:  Qin Wang; Zecheng Zuo; Xu Wang; Lianfeng Gu; Takeshi Yoshizumi; Zhaohe Yang; Liang Yang; Qing Liu; Wei Liu; Yun-Jeong Han; Jeong-Il Kim; Bin Liu; James A Wohlschlegel; Minami Matsui; Yoshito Oka; Chentao Lin
Journal:  Science       Date:  2016-10-21       Impact factor: 47.728

Review 4.  Photodimerization systems for regulating protein-protein interactions with light.

Authors:  Jessica I Spiltoir; Chandra L Tucker
Journal:  Curr Opin Struct Biol       Date:  2019-02-25       Impact factor: 6.809

Review 5.  Engineering genetically-encoded tools for optogenetic control of protein activity.

Authors:  Qi Liu; Chandra L Tucker
Journal:  Curr Opin Chem Biol       Date:  2017-05-17       Impact factor: 8.822

Review 6.  Beyond the photocycle-how cryptochromes regulate photoresponses in plants?

Authors:  Qin Wang; Zecheng Zuo; Xu Wang; Qing Liu; Lianfeng Gu; Yoshito Oka; Chentao Lin
Journal:  Curr Opin Plant Biol       Date:  2018-06-15       Impact factor: 7.834

Review 7.  Bringing It All Together: Coupling Excision Repair to the DNA Damage Checkpoint.

Authors:  Laura A Lindsey-Boltz
Journal:  Photochem Photobiol       Date:  2016-12-28       Impact factor: 3.421

Review 8.  Cryptochromes Orchestrate Transcription Regulation of Diverse Blue Light Responses in Plants.

Authors:  Zhaohe Yang; Bobin Liu; Jun Su; Jiakai Liao; Chentao Lin; Yoshito Oka
Journal:  Photochem Photobiol       Date:  2017-01-27       Impact factor: 3.421

9.  Photooligomerization Determines Photosensitivity and Photoreactivity of Plant Cryptochromes.

Authors:  Qing Liu; Tiantian Su; Wenjin He; Huibo Ren; Siyuan Liu; Yadi Chen; Lin Gao; Xiaohua Hu; Haoyue Lu; Shijiang Cao; Ying Huang; Xu Wang; Qin Wang; Chentao Lin
Journal:  Mol Plant       Date:  2020-01-14       Impact factor: 13.164

10.  Coactivator condensation at super-enhancers links phase separation and gene control.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Ann Boija; Isaac A Klein; Eliot L Coffey; Krishna Shrinivas; Brian J Abraham; Nancy M Hannett; Alicia V Zamudio; John C Manteiga; Charles H Li; Yang E Guo; Daniel S Day; Jurian Schuijers; Eliza Vasile; Sohail Malik; Denes Hnisz; Tong Ihn Lee; Ibrahim I Cisse; Robert G Roeder; Phillip A Sharp; Arup K Chakraborty; Richard A Young
Journal:  Science       Date:  2018-06-21       Impact factor: 47.728

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