Literature DB >> 23829529

The functions of natural antisense transcripts.

Megan Wight1, Andreas Werner.   

Abstract

NATs (natural antisense transcripts) are widespread in eukaryotic genomes. Experimental evidence indicates that sense and antisense transcripts interact, suggesting a role for NATs in the regulation of gene expression. On the other hand, the transcription of a gene locus in both orientations and RNA hybrid formation can also lead to transcriptional interference, trigger an immune response or induce gene silencing. Tissue-specific expression of NATs and the compartmentalization of cells ensure that the regulatory impact of NATs prevails. Consequently, NATs are now acknowledged as important modulators of gene expression. New mechanisms of action and important biological roles of NATs keep emerging, making regulatory RNAs an exciting and quickly moving area of research.

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Year:  2013        PMID: 23829529      PMCID: PMC4284957          DOI: 10.1042/bse0540091

Source DB:  PubMed          Journal:  Essays Biochem        ISSN: 0071-1365            Impact factor:   8.000


  39 in total

Review 1.  RNA interference.

Authors:  Gregory J Hannon
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.

Authors:  Hidenori Kiyosawa; Itaru Yamanaka; Naoki Osato; Shinji Kondo; Yoshihide Hayashizaki
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

3.  RNAs actively cycle on the Sm-like protein Hfq.

Authors:  Aurélie Fender; Johan Elf; Kornelia Hampel; Bastian Zimmermann; E Gerhart H Wagner
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

Review 4.  Regulation by small RNAs in bacteria: expanding frontiers.

Authors:  Gisela Storz; Jörg Vogel; Karen M Wassarman
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 5.  What are natural antisense transcripts good for?

Authors:  Andreas Werner; Daniel Swan
Journal:  Biochem Soc Trans       Date:  2010-08       Impact factor: 5.407

Review 6.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

7.  Post-transcriptional regulation of thyroid hormone receptor expression by cis-acting sequences and a naturally occurring antisense RNA.

Authors:  M L Hastings; H A Ingle; M A Lazar; S H Munroe
Journal:  J Biol Chem       Date:  2000-04-14       Impact factor: 5.157

8.  A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition.

Authors:  Manuel Beltran; Isabel Puig; Cristina Peña; José Miguel García; Ana Belén Alvarez; Raúl Peña; Félix Bonilla; Antonio García de Herreros
Journal:  Genes Dev       Date:  2008-03-15       Impact factor: 11.361

9.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

10.  Prolonged hypoxia differentially regulates hypoxia-inducible factor (HIF)-1alpha and HIF-2alpha expression in lung epithelial cells: implication of natural antisense HIF-1alpha.

Authors:  Tokujiro Uchida; Fabrice Rossignol; Michael A Matthay; Rémi Mounier; Sylvianne Couette; Eric Clottes; Christine Clerici
Journal:  J Biol Chem       Date:  2004-01-26       Impact factor: 5.157

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  67 in total

1.  Inferring targeting modes of Argonaute-loaded tRNA fragments.

Authors:  Lingyu Guan; Spyros Karaiskos; Andrey Grigoriev
Journal:  RNA Biol       Date:  2019-10-15       Impact factor: 4.652

2.  Transcriptome-wide-scale-predicted dsRNAs potentially involved in RNA homoeostasis are remarkably excluded from genes with no/very low expression in all developmental stages.

Authors:  Claude Pasquier; Sandra Agnel; Alain Robichon
Journal:  RNA Biol       Date:  2020-02-04       Impact factor: 4.652

3.  PTB-AS, a Novel Natural Antisense Transcript, Promotes Glioma Progression by Improving PTBP1 mRNA Stability with SND1.

Authors:  Liyuan Zhu; Qunfang Wei; Yingjiao Qi; Xiangbin Ruan; Fan Wu; Liang Li; Junjie Zhou; Wei Liu; Tao Jiang; Jing Zhang; Bin Yin; Jiangang Yuan; Boqin Qiang; Wei Han; Xiaozhong Peng
Journal:  Mol Ther       Date:  2019-06-05       Impact factor: 11.454

4.  Circadian Oscillation of Natural Antisense Transcripts Related to Human Core Clock Genes.

Authors:  Parisa Najari Hanjani; Masoud Golalipour
Journal:  Rep Biochem Mol Biol       Date:  2021-10

Review 5.  Long Non-coding RNA ZFPM2-AS1: A Novel Biomarker in the Pathogenesis of Human Cancers.

Authors:  Gabriel B K Sasa; Cheng Xuan; Guoliang Lyu; Xianfeng Ding; Fang Meiyu
Journal:  Mol Biotechnol       Date:  2022-01-31       Impact factor: 2.695

6.  Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency.

Authors:  Min Chen; Chenlu Wang; Hai Bao; Hui Chen; Yanwei Wang
Journal:  Mol Genet Genomics       Date:  2016-05-02       Impact factor: 3.291

Review 7.  Gene regulation of mammalian long non-coding RNA.

Authors:  Heeyoun Bunch
Journal:  Mol Genet Genomics       Date:  2017-09-11       Impact factor: 3.291

Review 8.  Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses.

Authors:  Jinna Hou; Dandan Lu; Annaliese S Mason; Baoquan Li; Meili Xiao; Sufang An; Donghui Fu
Journal:  Planta       Date:  2019-04-16       Impact factor: 4.116

Review 9.  HIV-1 Natural Antisense Transcription and Its Role in Viral Persistence.

Authors:  Rui Li; Rachel Sklutuis; Jennifer L Groebner; Fabio Romerio
Journal:  Viruses       Date:  2021-04-29       Impact factor: 5.048

10.  Antisense RNAs during early vertebrate development are divided in groups with distinct features.

Authors:  Sanjana Pillay; Hazuki Takahashi; Piero Carninci; Aditi Kanhere
Journal:  Genome Res       Date:  2021-04-01       Impact factor: 9.043

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