Literature DB >> 20659019

What are natural antisense transcripts good for?

Andreas Werner1, Daniel Swan.   

Abstract

NATs (natural antisense transcripts) are important regulators of eukaryotic gene expression. Interference between the expression of protein-coding sense transcripts and the corresponding NAT is well documented. In the present review, we focus on an additional, higher-order role of NATs that is currently emerging. The recent discovery of endogenous siRNAs (short interfering RNAs), as well as NAT-induced transcriptional gene silencing, are key to the proposed novel function of NATs.

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Year:  2010        PMID： 20659019      PMCID： PMC4284956          DOI： 10.1042/BST0381144

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN： 0300-5127            Impact factor:   5.407


  61 in total

1.  Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.

Authors:  Hidenori Kiyosawa; Itaru Yamanaka; Naoki Osato; Shinji Kondo; Yoshihide Hayashizaki
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

Review 2.  Genome-wide transcription and the implications for genomic organization.

Authors:  Philipp Kapranov; Aarron T Willingham; Thomas R Gingeras
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

Review 3.  What do natural antisense transcripts regulate?

Authors:  Andreas Werner; Mark Carlile; Daniel Swan
Journal:  RNA Biol       Date:  2009-01-02       Impact factor: 4.652

4.  Autoregulatory loop of Msx1 expression involving its antisense transcripts.

Authors:  Stéphane Petit; Fleur Meary; Laurence Pibouin; Jean-Claude Jeanny; Isabelle Fernandes; Anne Poliard; Dominique Hotton; Ariane Berdal; Sylvie Babajko
Journal:  J Cell Physiol       Date:  2009-08       Impact factor: 6.384

5.  Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs.

Authors:  Mark Carlile; Perihan Nalbant; Keziah Preston-Fayers; Gavin S McHaffie; Andreas Werner
Journal:  Physiol Genomics       Date:  2008-04-15       Impact factor: 3.107

6.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

7.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Deborah Bourc'his; Christopher Schaefer; Dubravka Pezic; Katalin Fejes Toth; Timothy Bestor; Gregory J Hannon
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

8.  Structural determinants of miRNAs for RISC loading and slicer-independent unwinding.

Authors:  Tomoko Kawamata; Hervé Seitz; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2009-08-16       Impact factor: 15.369

9.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

10.  Genome-wide analysis of antisense transcription with Affymetrix exon array.

Authors:  Xijin Ge; Wendy S Rubinstein; Yong-Chul Jung; Qingfa Wu
Journal:  BMC Genomics       Date:  2008-01-22       Impact factor: 3.969
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  23 in total

Review 1.  The search for endogenous siRNAs in the mammalian brain.

Authors:  Neil R Smalheiser
Journal:  Exp Neurol       Date:  2011-10-28       Impact factor: 5.330

2.  Inferring targeting modes of Argonaute-loaded tRNA fragments.

Authors:  Lingyu Guan; Spyros Karaiskos; Andrey Grigoriev
Journal:  RNA Biol       Date:  2019-10-15       Impact factor: 4.652

Review 3.  The functions of natural antisense transcripts.

Authors:  Megan Wight; Andreas Werner
Journal:  Essays Biochem       Date:  2013       Impact factor: 8.000

Review 4.  The presence, role and clinical use of spermatozoal RNAs.

Authors:  Meritxell Jodar; Sellappan Selvaraju; Edward Sendler; Michael P Diamond; Stephen A Krawetz
Journal:  Hum Reprod Update       Date:  2013-07-14       Impact factor: 15.610

5.  Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila.

Authors:  Oriol Calvete; Josefa González; Esther Betrán; Alfredo Ruiz
Journal:  Mol Biol Evol       Date:  2012-02-10       Impact factor: 16.240

6.  Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis.

Authors:  Haiyun Gan; Tanxi Cai; Xiwen Lin; Yujian Wu; Xiuxia Wang; Fuquan Yang; Chunsheng Han
Journal:  Mol Cell Proteomics       Date:  2013-01-16       Impact factor: 5.911

7.  Zinc-dependent regulation of the Adh1 antisense transcript in fission yeast.

Authors:  Kate M Ehrensberger; Carter Mason; Mark E Corkins; Cole Anderson; Natalie Dutrow; Bradley R Cairns; Brian Dalley; Brett Milash; Amanda J Bird
Journal:  J Biol Chem       Date:  2012-12-05       Impact factor: 5.157

8.  Conserved expression of natural antisense transcripts in mammals.

Authors:  Maurice H T Ling; Yuguang Ban; Hongxiu Wen; San Ming Wang; Steven X Ge
Journal:  BMC Genomics       Date:  2013-04-12       Impact factor: 3.969

9.  Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.

Authors:  Nicolas C Nalpas; Stephen D E Park; David A Magee; Maria Taraktsoglou; John A Browne; Kevin M Conlon; Kévin Rue-Albrecht; Kate E Killick; Karsten Hokamp; Amanda J Lohan; Brendan J Loftus; Eamonn Gormley; Stephen V Gordon; David E MacHugh
Journal:  BMC Genomics       Date:  2013-04-08       Impact factor: 3.969

10.  SOLiD-SAGE of endophyte-infected red fescue reveals numerous effects on host transcriptome and an abundance of highly expressed fungal secreted proteins.

Authors:  Karen V Ambrose; Faith C Belanger
Journal:  PLoS One       Date:  2012-12-28       Impact factor: 3.240
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