Literature DB >> 23827673

lincRNAs: genomics, evolution, and mechanisms.

Igor Ulitsky1, David P Bartel.   

Abstract

Long intervening noncoding RNAs (lincRNAs) are transcribed from thousands of loci in mammalian genomes and might play widespread roles in gene regulation and other cellular processes. This Review outlines the emerging understanding of lincRNAs in vertebrate animals, with emphases on how they are being identified and current conclusions and questions regarding their genomics, evolution and mechanisms of action.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID： 23827673      PMCID： PMC3924787          DOI： 10.1016/j.cell.2013.06.020

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  181 in total

1.  The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus.

Authors:  N Brockdorff; A Ashworth; G F Kay; V M McCabe; D P Norris; P J Cooper; S Swift; S Rastan
Journal:  Cell       Date:  1992-10-30       Impact factor: 41.582

2.  Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.

Authors:  F Michel; E Westhof
Journal:  J Mol Biol       Date:  1990-12-05       Impact factor: 5.469

3.  Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development.

Authors:  E M Coccia; C Cicala; A Charlesworth; C Ciccarelli; G B Rossi; L Philipson; V Sorrentino
Journal:  Mol Cell Biol       Date:  1992-08       Impact factor: 4.272

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Synthesis in vitro of a seven amino acid peptide encoded in the leader RNA of Rous sarcoma virus.

Authors:  P B Hackett; R B Petersen; C H Hensel; F Albericio; S I Gunderson; A C Palmenberg; G Barany
Journal:  J Mol Biol       Date:  1986-07-05       Impact factor: 5.469

6.  Polyadenylylated nuclear RNA encoded by Kaposi sarcoma-associated herpesvirus.

Authors:  R Sun; S F Lin; L Gradoville; G Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

7.  Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.

Authors:  C R Woese; L J Magrum; R Gupta; R B Siegel; D A Stahl; J Kop; N Crawford; J Brosius; R Gutell; J J Hogan; H F Noller
Journal:  Nucleic Acids Res       Date:  1980-05-24       Impact factor: 16.971

8.  Requirement for Xist in X chromosome inactivation.

Authors:  G D Penny; G F Kay; S A Sheardown; S Rastan; N Brockdorff
Journal:  Nature       Date:  1996-01-11       Impact factor: 49.962

Review 9.  Triplex DNA structures.

Authors:  M D Frank-Kamenetskii; S M Mirkin
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

10.  The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus.

Authors:  C J Brown; B D Hendrich; J L Rupert; R G Lafrenière; Y Xing; J Lawrence; H F Willard
Journal:  Cell       Date:  1992-10-30       Impact factor: 41.582
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  1154 in total

1.  Novel Long Non-coding RNA lncAMPC Promotes Metastasis and Immunosuppression in Prostate Cancer by Stimulating LIF/LIFR Expression.

Authors:  Wei Zhang; Xiaolei Shi; Rui Chen; Yasheng Zhu; Shihong Peng; Yifan Chang; Xinwen Nian; Guang'an Xiao; Ziyu Fang; Yaoming Li; Zhexu Cao; Lin Zhao; Guang Liu; Yinghao Sun; Shancheng Ren
Journal:  Mol Ther       Date:  2020-06-15       Impact factor: 11.454

2.  Optimization of mRNA design for protein expression in the crustacean Daphnia magna.

Authors:  Kerstin Törner; Takashi Nakanishi; Tomoaki Matsuura; Yasuhiko Kato; Hajime Watanabe
Journal:  Mol Genet Genomics       Date:  2014-03-02       Impact factor: 3.291

Review 3.  Readers of histone methylarginine marks.

Authors:  Sitaram Gayatri; Mark T Bedford
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 4.  Insight into lncRNA biology using hybridization capture analyses.

Authors:  Matthew D Simon
Journal:  Biochim Biophys Acta       Date:  2015-09-14

5.  Genome-wide screening identifies oncofetal lncRNA Ptn-dt promoting the proliferation of hepatocellular carcinoma cells by regulating the Ptn receptor.

Authors:  Jin-Feng Huang; Hong-Yue Jiang; Hui Cai; Yan Liu; Yi-Qing Zhu; Sha-Sha Lin; Ting-Ting Hu; Tian-Tian Wang; Wen-Jun Yang; Bang Xiao; Shu-Han Sun; Li-Ye Ma; Hui-Rong Yin; Fang Wang
Journal:  Oncogene       Date:  2019-01-14       Impact factor: 9.867

6.  Integrative Transcriptome Analyses of Metabolic Responses in Mice Define Pivotal LncRNA Metabolic Regulators.

Authors:  Ling Yang; Ping Li; Wenjing Yang; Xiangbo Ruan; Kurtis Kiesewetter; Jun Zhu; Haiming Cao
Journal:  Cell Metab       Date:  2016-09-22       Impact factor: 27.287

Review 7.  Non-coding RNA regulation of endothelial and macrophage functions during atherosclerosis.

Authors:  Binod Aryal; Yajaira Suárez
Journal:  Vascul Pharmacol       Date:  2018-03-15       Impact factor: 5.773

Review 8.  Long noncoding RNA turnover.

Authors:  Je-Hyun Yoon; Jiyoung Kim; Myriam Gorospe
Journal:  Biochimie       Date:  2015-03-10       Impact factor: 4.079

Review 9.  Non-coding RNAs in cardiovascular diseases: diagnostic and therapeutic perspectives.

Authors:  Wolfgang Poller; Stefanie Dimmeler; Stephane Heymans; Tanja Zeller; Jan Haas; Mahir Karakas; David-Manuel Leistner; Philipp Jakob; Shinichi Nakagawa; Stefan Blankenberg; Stefan Engelhardt; Thomas Thum; Christian Weber; Benjamin Meder; Roger Hajjar; Ulf Landmesser
Journal:  Eur Heart J       Date:  2018-08-01       Impact factor: 29.983

Review 10.  Long noncoding RNAs in innate and adaptive immunity.

Authors:  Katherine A Fitzgerald; Daniel R Caffrey
Journal:  Curr Opin Immunol       Date:  2013-12-22       Impact factor: 7.486
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