Literature DB >> 25769416

Long noncoding RNA turnover.

Je-Hyun Yoon1, Jiyoung Kim2, Myriam Gorospe3.   

Abstract

Most RNAs transcribed in mammalian cells lack protein-coding sequences. Among them is a vast family of long (>200 nt) noncoding (lnc)RNAs. LncRNAs can modulate cellular protein expression patterns by influencing the transcription of many genes, the post-transcriptional fate of mRNAs and ncRNAs, and the turnover and localization of proteins. Given the broad impact of lncRNAs on gene regulation, there is escalating interest in elucidating the mechanisms that govern the steady-state levels of lncRNAs. In this review, we summarize our current knowledge of the factors and mechanisms that modulate mammalian lncRNA stability. Published by Elsevier B.V.

Entities:  

Keywords:  Long noncoding RNA; RNA-binding protein; Ribonucleoprotein complex

Mesh：

Substances：

Year:  2015        PMID： 25769416      PMCID： PMC4565787          DOI： 10.1016/j.biochi.2015.03.001

Source DB:  PubMed          Journal:  Biochimie        ISSN： 0300-9084            Impact factor:   4.079


  77 in total

1.  tRNAs marked with CCACCA are targeted for degradation.

Authors:  Jeremy E Wilusz; Joseph M Whipple; Eric M Phizicky; Phillip A Sharp
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

Review 2.  Mechanisms of deadenylation-dependent decay.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-09-15       Impact factor: 9.957

Review 3.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

Review 4.  Functional interactions among microRNAs and long noncoding RNAs.

Authors:  Je-Hyun Yoon; Kotb Abdelmohsen; Myriam Gorospe
Journal:  Semin Cell Dev Biol       Date:  2014-06-02       Impact factor: 7.727

5.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

Review 6.  The multilayered complexity of ceRNA crosstalk and competition.

Authors:  Yvonne Tay; John Rinn; Pier Paolo Pandolfi
Journal:  Nature       Date:  2014-01-16       Impact factor: 49.962

7.  MicroRNAs trigger dissociation of eIF4AI and eIF4AII from target mRNAs in humans.

Authors:  Akira Fukao; Yuichiro Mishima; Naoki Takizawa; Shigenori Oka; Hiroaki Imataka; Jerry Pelletier; Nahum Sonenberg; Christian Thoma; Toshinobu Fujiwara
Journal:  Mol Cell       Date:  2014-10-02       Impact factor: 17.970

Review 8.  Mechanisms of endonuclease-mediated mRNA decay.

Authors:  Daniel R Schoenberg
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-02-10       Impact factor: 9.957

Review 9.  RNA degradation in Saccharomyces cerevisae.

Authors:  Roy Parker
Journal:  Genetics       Date:  2012-07       Impact factor: 4.562

10.  Genome-wide analysis of long noncoding RNA stability.

Authors:  Michael B Clark; Rebecca L Johnston; Mario Inostroza-Ponta; Archa H Fox; Ellen Fortini; Pablo Moscato; Marcel E Dinger; John S Mattick
Journal:  Genome Res       Date:  2012-03-09       Impact factor: 9.043
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  25 in total

1.  Age-Related Expression of a Repeat-Rich Intergenic Long Noncoding RNA in the Rat Brain.

Authors:  Sukhleen Kour; Pramod C Rath
Journal:  Mol Neurobiol       Date:  2016-01-11       Impact factor: 5.590

Review 2.  The emerging role of long non-coding RNA in gallbladder cancer pathogenesis.

Authors:  Akanksha Khandelwal; Akshay Malhotra; Manju Jain; Karen M Vasquez; Aklank Jain
Journal:  Biochimie       Date:  2016-11-25       Impact factor: 4.079

3.  Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection.

Authors:  Lei Chen; Yu-Hang Zhang; Guohua Huang; Xiaoyong Pan; ShaoPeng Wang; Tao Huang; Yu-Dong Cai
Journal:  Mol Genet Genomics       Date:  2017-09-14       Impact factor: 3.291

4.  Regulation of Peripheral Myelination through Transcriptional Buffering of Egr2 by an Antisense Long Non-coding RNA.

Authors:  Margot Martinez-Moreno; Timothy Mark O'Shea; John P Zepecki; Alexander Olaru; Jennifer K Ness; Robert Langer; Nikos Tapinos
Journal:  Cell Rep       Date:  2017-08-22       Impact factor: 9.423

5.  Long Non-Coding RNA Review and Implications in Lung Diseases.

Authors:  Michael Groot; Duo Zhang; Yang Jin
Journal:  JSM Bioinform Genom Proteom       Date:  2018-06-30

6.  Long noncoding RNA SNHG22 increases ZEB1 expression via competitive binding with microRNA-429 to promote the malignant development of papillary thyroid cancer.

Authors:  Hong Gao; Xiaosong Sun; Hongdong Wang; Ying Zheng
Journal:  Cell Cycle       Date:  2020-04-19       Impact factor: 4.534

Review 7.  RNA as a fundamental component of interphase chromosomes: could repeats prove key?

Authors:  Lisa L Hall; Jeanne B Lawrence
Journal:  Curr Opin Genet Dev       Date:  2016-05-21       Impact factor: 5.578

8.  DOCK9 antisense RNA2 interacts with LIN28B to stabilize Wnt5a and boosts proliferation and migration of oxidized low densitylipoprotein-induced vascular smooth muscle cells.

Authors:  Jiachong Shi; Bo Zhou; Zhi Tian
Journal:  Bioengineered       Date:  2022-03       Impact factor: 6.832

9.  Long noncoding RNA AFAP1-AS1, a potential novel biomarker to predict the clinical outcome of cancer patients: a meta-analysis.

Authors:  Fang-Teng Liu; Qi-Zhen Xue; Pei-Qian Zhu; Hong-Liang Luo; Yi Zhang; Tengfei Hao
Journal:  Onco Targets Ther       Date:  2016-07-12       Impact factor: 4.147

Review 10.  Effect of Environmental Chemical Stress on Nuclear Noncoding RNA Involved in Epigenetic Control.

Authors:  Patrizio Arrigo; Alessandra Pulliero
Journal:  Biomed Res Int       Date:  2015-08-03       Impact factor: 3.411
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